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[173290_at]

Description C56955_rc /REP_DB=TREMBL Accession /GB=C56955 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk308b12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 35      6grp_high1_10_10 > 53      4grp_highest_8_8 > 17      4grp_high_8_8 > 61      6grp_highest_nonorm > 36      6grp_total > 52      4grp_total > 59      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2722
1 2 3 4 range
A 3833.8
(0.4)
P 		4199.5
(1.3)
P 		4921.7
(3)
P 		2394.9
(-3)
P 		2527
B 3373
(-0.7)
P 		4600.6
(2.4)
P 		4853.6
(3)
P 		2443
(-3)
P 		2411
C 3896.3
(0.8)
P 		4511
(2.2)
P 		4857.5
(3)
P 		2199.9
(-3)
P 		2658
avr 3701
(0.2) 		4437
(2) 		4877.6
(3) 		2345.9
(-3) 		2532

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2993
1 2 3 4 5 6 range
A 3550.8
(-2)
P 		4043.8
(-1)
P 		6031.3
(3)
P 		4268.1
(-0.5)
P 		3075.4
(-2.9)
P 		3038.8
(-3)
P 		2993
B 3869.1
(-2.9)
P 		4563.3
(-0.5)
P 		5544.3
(3)
P 		3849.8
(-3)
P 		4005.3
(-2.4)
P 		3895.7
(-2.8)
P 		1695
C 3629.1
(-2)
P 		4440.1
(3)
P 		4323.8
(2.3)
P 		4022.8
(0.4)
P 		3465.4
(-3)
P 		3970.6
(0.1)
P 		975
avr 3683
(-2.4) 		4349.1
(-0.2) 		5299.8
(3) 		4046.9
(-1.2) 		3515.4
(-3) 		3635
(-2.6) 		1784
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1342
1 2 3 4 range
A 1395.9
(3)
P 		911.6
(0.2)
P 		1286.6
(2.4)
P 		350.6
(-3)
P 		1045
B 1075.6
(2.4)
P 		1136.2
(3)
P 		1124.7
(2.9)
P 		520.6
(-3)
P 		616
C 1289.8
(1.2)
P 		1297
(1.2)
P 		1693
(3)
P 		370.9
(-3)
P 		1322
avr 1253.8
(2.3) 		1114.9
(1.4) 		1368.1
(3) 		414
(-3) 		954

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 973
1 2 3 4 5 6 range
A 654.6
(-3)
P 		1438.2
(3)
P 		1313.5
(2)
P 		1082.5
(0.3)
P 		928
(-0.9)
P 		739.8
(-2.3)
P 		784
B 1346.3
(0.2)
P 		1518.9
(1.9)
P 		1346.3
(0.2)
P 		1019.7
(-3)
P 		1627.3
(3)
P 		1452.7
(1.3)
P 		608
C 1345.1
(2.9)
P 		1354.8
(3)
P 		1100.5
(0.2)
P 		809
(-3)
P 		1121.3
(0.4)
P 		1329.2
(2.7)
P 		546
avr 1115.3
(-1.1) 		1437.3
(3) 		1253.4
(0.6) 		970.4
(-3) 		1225.5
(0.3) 		1173.9
(-0.4) 		467
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173290_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28041
Sequence Type Exemplar sequence
Representative Public ID C56955 NCBI
Target Description C56955_rc /REP_DB=TREMBL Accession /GB=C56955 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk308b12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065018(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065018 NCBI Caenorhabditis elegans Y67D2.3 (Y67D2.3) mRNA, complete cds. 11/11 None
SNAP00000002892 ENSEMBL cdna:SNAP chromosome:CEL140:III:1532890:1558210:1 9/11 None
GENEFINDER00000002895 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1540496:1544851:1 9/11 None
Y67D2.3 ENSEMBL cdna:known chromosome:CEL140:III:1540496:1543481:1 gene:Y67D2.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000014003 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1541946-1543361(+) 97.09 97.09
Public Domain and Genome References
Gene Title
Ensembl Y67D2.3
Entrez Gene 175307 Entrez gene
SwissProt Q9BKQ9 EMBL-EBI
WormBase CE27308 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK27889 Hypothetical protein Y67D2.4 [Caenorhabditis elegans] 1.0E-105
blast AAK27885 Hypothetical protein Y67D2.3 [Caenorhabditis elegans] ref|NP_497419.1| Y67D2.3 [Caenorhabditis elegans] 4.0E-89
blast AAK27885 Hypothetical protein Y67D2.3 [Caenorhabditis elegans] ref|NP_497419.1| Y67D2.3 [Caenorhabditis elegans] 2.0E-86
blast NP_497417 Y67D2.4 [Caenorhabditis elegans] 8.0E-53
blast CAE66441 Hypothetical protein CBG11715 [Caenorhabditis briggsae] 9.0E-52
blast CAE66441 Hypothetical protein CBG11715 [Caenorhabditis briggsae] 1.0E-51
blast AAK27885 Hypothetical protein Y67D2.3 [Caenorhabditis elegans] ref|NP_497419.1| Y67D2.3 [Caenorhabditis elegans] 1.0E-46
blast XP_794189 PREDICTED: similar to glutamate synthetase like (16.8 kD) (3C631) [Strongylocentrotus purpuratus] 1.0E-17
Protein Domains
Database ID Description E-Value
Pfam IPR002917 EMBL-EBI GTP-binding protein, HSR1-related 1.0E-21
Sequence
Target Sequence 
>C. ELEGANS:173290_AT
ggaatttatccaatgtgtgactgcaaacagactggaactcgaccaatttgcgatggaaaa
cacgctgatgtatccaaagctccacgtgatctaaacgctacgagaatggttgcattcgac
gaatcgccagtttacgcaggagttgctcnnnnnttgggatataagccgnnnnntggtgga
ttccagtagtccggagactacgctgagacagca

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAATTTATCCAATGTGTGACTGCA 516 533 57 Antisense
GACTGCAAACAGACTGGAACTCGAC 602 375 75 Antisense
GGAACTCGACCAATTTGCGATGGAA 341 529 90 Antisense
GCGATGGAAAACACGCTGATGTATC 241 291 106 Antisense
CTGATGTATCCAAAGCTCCACGTGA 635 237 121 Antisense
AGCTCCACGTGATCTAAACGCTACG 684 79 134 Antisense
AAACGCTACGAGAATGGTTGCATTC 95 127 149 Antisense
GGTTGCATTCGACGAATCGCCAGTT 645 507 164 Antisense
AATCGCCAGTTTACGCAGGAGTTGC 276 169 178 Antisense
GGTGGATTCCAGTAGTCCGGAGACT 283 499 231 Antisense
GTCCGGAGACTACGCTGAGACAGCA 162 477 245 Antisense
Sequence Source Affymetrix Proprietary Database