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[173289_s_at]

Description CEC3873_rc /REP_DB=TREMBL Accession /GB=C10387 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk145c7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 95      6grp_high1_10_10 > 68      4grp_highest_8_8 > 34      4grp_high_8_8 > 49      6grp_highest_nonorm > 92      6grp_total > 69      4grp_total > 62      6grp_highest_sub > Cu      6grp_cgc > 29      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 190
1 2 3 4 range
A 395.8
(3)
P 		260.9
(-1.3)
P 		292.5
(-0.3)
P 		205.7
(-3)
P 		190
B 302.1
(2.2)
P 		316
(3)
P 		272.8
(0.5)
P 		210.9
(-3)
P 		105
C 359.1
(3)
P 		214.3
(-3)
P 		322.8
(1.5)
P 		232
(-2.3)
P 		145
avr 352.3
(3) 		263.7
(-0.9) 		296
(0.5) 		216.2
(-3) 		136

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 290
1 2 3 4 5 6 range
A 320
(1.6)
P 		313.8
(1.4)
P 		263.2
(-0.6)
P 		203
(-3)
P 		281.8
(0.1)
P 		354.9
(3)
P 		152
B 349.7
(1.3)
P 		294.5
(-0.6)
P 		272.2
(-1.4)
P 		225
(-3)
P 		266.4
(-1.6)
P 		397.9
(3)
P 		173
C 296.5
(-1.3)
P 		316.4
(-0.8)
P 		300.2
(-1.2)
P 		215.8
(-3)
P 		383.9
(0.6)
P 		493.1
(3)
P 		277
avr 322.1
(0.2) 		308.2
(-0.2) 		278.5
(-1.1) 		214.6
(-3) 		310.7
(-0.1) 		415.3
(3) 		201
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 144.1
(3)
P 		56.6
(-1.6)
P 		76.5
(-0.6)
P 		30.1
(-3)
P 		114
B 96.3
(3)
P 		78.1
(0.9)
P 		63.2
(-0.9)
P 		44.9
(-3)
P 		51
C 118.9
(3)
P 		61.6
(-1.3)
P 		112.5
(2.5)
P 		39.1
(-3)
P 		80
avr 119.8
(3) 		65.4
(-1) 		84.1
(0.4) 		38
(-3) 		82

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 122
1 2 3 4 5 6 range
A 59
(-2.3)
P 		111.6
(3)
P 		57.3
(-2.4)
P 		51.5
(-3)
P 		85
(0.3)
P 		86.4
(0.5)
P 		60
B 121.7
(1.2)
P 		98
(-0.4)
P 		66.1
(-2.6)
P 		59.6
(-3)
P 		108.2
(0.3)
P 		148.4
(3)
P 		89
C 109.9
(0.3)
P 		96.5
(-0.4)
P 		76.4
(-1.4)
P 		43.4
(-3)
P 		124.2
(1)
P 		165.1
(3)
P 		122
avr 96.9
(0.3) 		102
(0.7) 		66.6
(-1.9) 		51.5
(-3) 		105.8
(1) 		133.3
(3) 		82
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173289_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27994
Sequence Type Exemplar sequence
Representative Public ID CEC3873 NCBI
Target Description CEC3873_rc /REP_DB=TREMBL Accession /GB=C10387 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk145c7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071637(11), NM_182367(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071637 NCBI Caenorhabditis elegans MTM (myotubularin) family member (mtm-9) (mtm-9) mRNA, complete cds. 11/11 A 
NM_182367 NCBI Caenorhabditis elegans MTM (myotubularin) family member (mtm-9) (mtm-9) mRNA, complete cds. 11/11 None
GENEFINDER00000040126 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3743393:3750532:1 9/11 None
Y39H10A.3a.1 ENSEMBL cdna:known chromosome:CEL140:V:3743389:3749084:1 gene:Y39H10A.3 11/11 None
Y39H10A.3b ENSEMBL cdna:known chromosome:CEL140:V:3743391:3749214:1 gene:Y39H10A.3 11/11 None
Y39H10A.3a.2 ENSEMBL cdna:known chromosome:CEL140:V:3743391:3749084:1 gene:Y39H10A.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3748892-3749204(+) 89.08 89.08
Public Domain and Genome References
Ensembl Y39H10A.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK84604 Mtm (myotubularin) family protein 9, isoform a [Caenorhabditis elegans] ref|NP_504038.1| MTM (myotubularin) family member (mtm-9) [Caenorhabditis elegans] gb|AAP79303.1| myotubularin-related protein MTM-9 [Caenorhabditis elegans] 0.0
blast CAE62558 Hypothetical protein CBG06668 [Caenorhabditis briggsae] 0.0
blast AAT68891 Mtm (myotubularin) family protein 9, isoform b [Caenorhabditis elegans] ref|NP_872167.2| MTM (myotubularin) family member (mtm-9) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR010569 EMBL-EBI Myotubularin-related 6.1E-62
Pfam IPR010569 EMBL-EBI Myotubularin-related 6.1E-62
Pfam IPR010569 EMBL-EBI Myotubularin-related 9.1E-62
Sequence
Target Sequence 
>C. ELEGANS:173289_S_AT
cgccccgacaacagttggtcgacacccgaaaccgaaaccattcaaagtttggccgatcat
tggaagctccgcgagaaggagctcatcgcaaaagcatcatcgctccgtcgaagtgtcgtc
gaactttcgagagaacttcgcgttttgtcgccaatgtag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGCCCCGACAACAGTTGGTCGACAC 690 253 80 Antisense
CGACAACAGTTGGTCGACACCCGAA 349 251 85 Antisense
GAAACCATTCAAAGTTTGGCCGATC 578 357 113 Antisense
GTTTGGCCGATCATTGGAAGCTCCG 642 451 126 Antisense
GCTCATCGCAAAAGCATCATCGCTC 346 301 160 Antisense
ATCGCAAAAGCATCATCGCTCCGTC 459 37 164 Antisense
GTCGAAGTGTCGTCGAACTTTCGAG 270 473 186 Antisense
GAAGTGTCGTCGAACTTTCGAGAGA 414 335 189 Antisense
GAACTTTCGAGAGAACTTCGCGTTT 675 347 200 Antisense
GAACTTCGCGTTTTGTCGCCAATGT 52 351 212 Antisense
ACTTCGCGTTTTGTCGCCAATGTAG 16 103 214 Antisense
Sequence Source Affymetrix Proprietary Database