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[173283_s_at]

Description CEC687_rc /REP_DB=TREMBL Accession /GB=C07687 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk156e3 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 96      6grp_high1_10_10 > 68      6grp_highest_nonorm > 91      6grp_total > 59      4grp_total > 45      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 145
1 2 3 4 range
A 162.1
(3)
P 		139.9
(1.3)
P 		84.3
(-3)
A 		144
(1.6)
A 		78
B 183.2
(3)
P 		167.7
(2.4)
P 		104.5
(-0.3)
P 		38.3
(-3)
A 		145
C 164.2
(3)
P 		140.8
(1.1)
P 		89.5
(-3)
P 		99.1
(-2.2)
A 		75
avr 169.8
(3) 		149.5
(1.4) 		92.8
(-3) 		93.8
(-2.9) 		77

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 294
1 2 3 4 5 6 range
A 286.2
(2)
P 		164.2
(-1.1)
P 		135.1
(-1.9)
P 		91.6
(-3)
P 		249.1
(1.1)
P 		323
(3)
P 		231
B 229.5
(-0.6)
P 		127.8
(-3)
P 		159.4
(-2.3)
P 		163.7
(-2.2)
P 		193.1
(-1.5)
P 		385.4
(3)
P 		258
C 189.3
(-1.1)
P 		174.3
(-1.5)
P 		116.7
(-2.9)
P 		113.9
(-3)
P 		140.5
(-2.3)
P 		357.3
(3)
P 		243
avr 235
(-0.1) 		155.4
(-2.2) 		137.1
(-2.6) 		123.1
(-3) 		194.2
(-1.2) 		355.2
(3) 		232
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 59
(3)
P 		30.4
(-1.5)
P 		22
(-2.9)
A 		21.1
(-3)
A 		38
B 58.4
(3)
P 		41.4
(1)
P 		24.2
(-1.1)
P 		8.2
(-3)
A 		50
C 54.4
(3)
P 		40.5
(0.8)
P 		31.2
(-0.7)
P 		16.7
(-3)
A 		38
avr 57.3
(3) 		37.4
(0.2) 		25.8
(-1.5) 		15.3
(-3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 121
1 2 3 4 5 6 range
A 52.8
(0.2)
P 		58.4
(0.8)
P 		29.4
(-2.3)
P 		23.2
(-3)
P 		75.2
(2.6)
P 		78.6
(3)
P 		55
B 79.9
(-0.6)
P 		42.6
(-2.8)
P 		38.7
(-3)
P 		43.3
(-2.7)
P 		78.4
(-0.7)
P 		143.7
(3)
P 		105
C 70.2
(-0.1)
P 		53.2
(-1.1)
P 		29.7
(-2.6)
P 		22.9
(-3)
P 		45.5
(-1.6)
P 		119.6
(3)
P 		97
avr 67.6
(-0.3) 		51.4
(-1.5) 		32.6
(-2.8) 		29.8
(-3) 		66.4
(-0.4) 		114
(3) 		84
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173283_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27722
Sequence Type Exemplar sequence
Representative Public ID CEC687 NCBI
Target Description CEC687_rc /REP_DB=TREMBL Accession /GB=C07687 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk156e3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060944(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060944 NCBI Caenorhabditis elegans T04D3.5 (T04D3.5) mRNA, complete cds. 11/11 A 
SNAP00000016266 ENSEMBL cdna:SNAP chromosome:CEL140:I:13337433:13338876:-1 11/11 None
GENEFINDER00000016275 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13337433:13338876:-1 11/11 None
T04D3.5 ENSEMBL cdna:known chromosome:CEL140:I:13337354:13339051:-1 gene:T04D3.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13337340-13337532(-) 54.84 54.84
Public Domain and Genome References
Gene Title
Ensembl T04D3.5
Entrez Gene 173201 Entrez gene
SwissProt O02299 EMBL-EBI
WormBase CE13161 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03287 Hypothetical protein T04D3.5 [Caenorhabditis elegans] ref|NP_493345.1| T04D3.5 [Caenorhabditis elegans] 1.0E-174
blast CAE73024 Hypothetical protein CBG20391 [Caenorhabditis briggsae] 1.0E-61
Sequence
Target Sequence 
>C. ELEGANS:173283_S_AT
gcagcgttgctcagaacttgtacggatccacatgagttcacagaggcgtgtgaagtgatt
atcatcaccaccatcgttttctacttggaatacgtagatttccgccgaagctgcgaggca
ttgatggcaataaaaccgacagtcacctacggacaactctttgaaatcttccagatctac
tttccaaaccgagccaaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAGCGTTGCTCAGAACTTGTACGG 14 315 15 Antisense
ACTTGTACGGATCCACATGAGTTCA 152 103 30 Antisense
GAGGCGTGTGAAGTGATTATCATCA 207 405 57 Antisense
TCACCACCATCGTTTTCTACTTGGA 211 619 79 Antisense
GAATACGTAGATTTCCGCCGAAGCT 263 327 102 Antisense
TAGATTTCCGCCGAAGCTGCGAGGC 203 651 109 Antisense
GAAGCTGCGAGGCATTGATGGCAAT 265 343 121 Antisense
TGGCAATAAAACCGACAGTCACCTA 198 547 139 Antisense
GTCACCTACGGACAACTCTTTGAAA 525 459 156 Antisense
TGAAATCTTCCAGATCTACTTTCCA 137 573 176 Antisense
ATCTACTTTCCAAACCGAGCCAAAG 481 29 189 Antisense
Sequence Source Affymetrix Proprietary Database