[Home] | [Total List]

[173281_s_at]

Description CEK107E8F /REP_DB=TREMBL Accession /GB=D75625 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk107e8 : 5prime end, single read.
Cluster 6grp_total > 55      4grp_total > 06      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 210
1 2 3 4 range
A 52.3
(-2.3)
A 		52.9
(-2.2)
A 		47.6
(-3)
A 		89.2
(3)
A 		42
B 138.8
(1.8)
A 		26.6
(-3)
A 		151.9
(2.3)
A 		167.7
(3)
A 		141
C 123.1
(-1.4)
P 		80.5
(-3)
A 		103.3
(-2.1)
A 		236.9
(3)
A 		156
avr 104.7
(-0.2) 		53.3
(-3) 		100.9
(-0.4) 		164.6
(3) 		111

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 112
1 2 3 4 5 6 range
A 8.9
(-3)
A 		70.3
(2.1)
A 		81.2
(3)
A 		20.1
(-2.1)
A 		11.3
(-2.8)
A 		28.5
(-1.4)
A 		72
B 29.5
(-0.7)
A 		59.7
(3)
A 		17.3
(-2.1)
A 		59.9
(3)
A 		10.1
(-3)
A 		51.1
(1.9)
A 		50
C 10
(-2.8)
A 		67.5
(0.3)
A 		36.9
(-1.4)
A 		12
(-2.7)
A 		6.3
(-3)
A 		117.8
(3)
A 		112
avr 16.1
(-2.3) 		65.8
(3) 		45.1
(0.8) 		30.7
(-0.7) 		9.2
(-3) 		65.8
(3) 		57
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 19
(3)
A 		11.5
(-3)
A 		12.4
(-2.3)
A 		13.1
(-1.7)
A 		8
B 44.3
(3)
A 		6.6
(-3)
A 		35.2
(1.6)
A 		35.7
(1.6)
A 		38
C 40.8
(3)
P 		23.2
(-3)
A 		36
(1.4)
A 		39.9
(2.7)
A 		18
avr 34.7
(3) 		13.8
(-3) 		27.9
(1) 		29.6
(1.5) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 1.6
(-3)
A 		25
(3)
A 		17.7
(1.1)
A 		5.1
(-2.1)
A 		3.4
(-2.5)
A 		6.9
(-1.6)
A 		23
B 10.3
(-0.6)
A 		19.9
(3)
A 		4.2
(-3)
A 		15.9
(1.5)
A 		4.1
(-3)
A 		19
(2.7)
A 		16
C 3.7
(-2.7)
A 		20.6
(-0)
A 		9.4
(-1.8)
A 		2.4
(-3)
A 		2.1
(-3)
A 		39.4
(3)
A 		37
avr 5.2
(-2.4) 		21.8
(3) 		10.4
(-0.7) 		7.8
(-1.5) 		3.2
(-3) 		21.8
(3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173281_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28075
Sequence Type Exemplar sequence
Representative Public ID CEK107E8F NCBI
Target Description CEK107E8F /REP_DB=TREMBL Accession /GB=D75625 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk107e8 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) CEK107E8F
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
CEK107E8F CEK107E8F /REP_DB=TREMBL Accession /GB=D75625 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk107e8 : 5prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:794291-795076(+) 52.56 52.56
Sequence
Target Sequence 
>C. ELEGANS:173281_S_AT
tcttgcttcccggtgtcgggaggcatctctatctcgtggcaacacgagagcttatgccct
atgtatggccttggcgtcgtagtgaattctgcgacgcttgccaacgccagatcactctgg
ttcaatgtcggggcgctaaatcacttgcatacgacttggtctcttggtcaaggtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTGCTTCCCGGTGTCGGGAGGCA 258 613 26 Antisense
TTCCCGGTGTCGGGAGGCATCTCTA 242 697 32 Antisense
GCAACACGAGAGCTTATGCCCTATG 494 317 64 Antisense
ATGCCCTATGTATGGCCTTGGCGTC 305 39 79 Antisense
GGCCTTGGCGTCGTAGTGAATTCTG 430 541 92 Antisense
AGTGAATTCTGCGACGCTTGCCAAC 54 61 106 Antisense
TGCCAACGCCAGATCACTCTGGTTC 400 587 124 Antisense
AGATCACTCTGGTTCAATGTCGGGG 432 65 134 Antisense
AATGTCGGGGCGCTAAATCACTTGC 70 165 149 Antisense
ATCACTTGCATACGACTTGGTCTCT 650 27 165 Antisense
ACGACTTGGTCTCTTGGTCAAGGTG 230 91 176 Antisense
Sequence Source Affymetrix Proprietary Database