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[173280_at]

Description C51951_rc /REP_DB=TREMBL Accession /GB=C51951 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk225e3 : 3prime end, single read.
Cluster 6grp_total > 86      4grp_total > 20      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 174
1 2 3 4 range
A 115
(-2.6)
A 		139.2
(-0.9)
A 		109.2
(-3)
A 		195.4
(3)
A 		86
B 152
(-0.2)
A 		130.7
(-0.9)
A 		69.7
(-3)
A 		243.9
(3)
A 		174
C 159.2
(0)
A 		140.2
(-1.3)
A 		114.5
(-3)
A 		203.5
(3)
A 		89
avr 142.1
(-0.7) 		136.7
(-1) 		97.8
(-3) 		214.3
(3) 		117

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 216
1 2 3 4 5 6 range
A 78.5
(-3)
A 		103.9
(-2.2)
A 		145.2
(-0.8)
A 		261
(3)
P 		190.1
(0.7)
A 		228.9
(1.9)
P 		183
B 116
(-2.6)
A 		103.9
(-3)
A 		130.8
(-2)
A 		164.3
(-0.8)
A 		140.1
(-1.7)
A 		268
(3)
P 		164
C 110.2
(-3)
A 		132.8
(-2.3)
A 		159.3
(-1.4)
A 		114.6
(-2.9)
A 		176.3
(-0.9)
A 		294.9
(3)
P 		185
avr 101.6
(-3) 		113.5
(-2.6) 		145.1
(-1.4) 		180
(-0.1) 		168.8
(-0.5) 		263.9
(3) 		162
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 41.9
(3)
A 		30.2
(-2.2)
A 		28.5
(-3)
A 		28.6
(-3)
A 		13
B 48.5
(2.4)
A 		32.3
(-0.3)
A 		16.2
(-3)
A 		52
(3)
A 		36
C 52.7
(3)
A 		40.3
(-1)
A 		39.9
(-1.2)
A 		34.3
(-3)
A 		18
avr 47.7
(3) 		34.3
(-1.1) 		28.2
(-3) 		38.3
(0.1) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 14.5
(-3)
A 		36.9
(-0.4)
A 		31.6
(-1)
A 		66.2
(3)
P 		57.4
(2)
A 		55.7
(1.8)
P 		52
B 40.3
(-2.3)
A 		34.6
(-2.8)
A 		31.8
(-3)
A 		43.5
(-2)
A 		56.9
(-0.8)
A 		99.9
(3)
P 		68
C 40.8
(-1.6)
A 		40.5
(-1.6)
A 		40.6
(-1.6)
A 		23.1
(-3)
A 		57
(-0.3)
A 		98.7
(3)
P 		76
avr 31.9
(-3) 		37.3
(-2.4) 		34.7
(-2.7) 		44.3
(-1.6) 		57.1
(-0.1) 		84.8
(3) 		53
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173280_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27992
Sequence Type Exemplar sequence
Representative Public ID C51951 NCBI
Target Description C51951_rc /REP_DB=TREMBL Accession /GB=C51951 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk225e3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065847(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065847 NCBI Caenorhabditis elegans Y37B11A.2 (Y37B11A.2) mRNA, complete cds. 9/11 None
SNAP00000019666 ENSEMBL cdna:SNAP chromosome:CEL140:III:5774694:5778473:-1 9/11 None
GENEFINDER00000019671 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5774694:5785271:-1 9/11 None
Y37B11A.2 ENSEMBL cdna:known chromosome:CEL140:III:5774631:5782503:-1 gene:Y37B11A.2 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5774651-5775086(-) 97.38 97.38
Public Domain and Genome References
Gene Title
Ensembl Y37B11A.2
Entrez Gene 175809 Entrez gene
WormBase CE27403 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.6855.1.S1_AT similar to DNA polymerase zeta catalytic subunit (hREV3) cfa
CANINE_2:CFAAFFX.6861.1.S1_S_AT similar to DNA polymerase zeta catalytic subunit (hREV3) cfa
DROSOPHILA_2:1631822_AT mutagen-sensitive 205 dm
DROSGENOME1:154926_AT mutagen-sensitive 205 dm
CHICKEN:GGAAFFX.24577.1.S1_S_AT similar to DNA polymerase zeta catalytic subunit (hREV3) gga
HG-U133_PLUS_2:208070_S_AT REV3-like, catalytic subunit of DNA polymerase zeta (yeast) hs
HG-U133A:208070_S_AT REV3-like, catalytic subunit of DNA polymerase zeta (yeast) hs
HG-FOCUS:208070_S_AT REV3-like, catalytic subunit of DNA polymerase zeta (yeast) hs
HG-U133A_2:208070_S_AT REV3-like, catalytic subunit of DNA polymerase zeta (yeast) hs
HU35KSUBA:R12903_AT REV3-like, catalytic subunit of DNA polymerase zeta (yeast) hs
HU35KSUBB:RC_R49301_AT REV3-like, catalytic subunit of DNA polymerase zeta (yeast) hs
HU35KSUBD:RC_AA258205_AT REV3-like, catalytic subunit of DNA polymerase zeta (yeast) hs
U133_X3P:G4506482_3P_A_AT REV3-like, catalytic subunit of DNA polymerase zeta (yeast) hs
HG-U95AV2:38908_S_AT REV3-like, catalytic subunit of DNA polymerase zeta (yeast) hs
HG-U95D:73965_S_AT REV3-like, catalytic subunit of DNA polymerase zeta (yeast) hs
HG-U95AV2:550_AT REV3-like, catalytic subunit of DNA polymerase zeta (yeast) hs
HC-G110:550_AT REV3-like, catalytic subunit of DNA polymerase zeta (yeast) hs
HG-U133B:236555_AT REV3-like, catalytic subunit of DNA polymerase zeta (yeast) hs
HG-U133_PLUS_2:236555_AT REV3-like, catalytic subunit of DNA polymerase zeta (yeast) hs
HU35KSUBC:RC_N47797_AT REV3-like, catalytic subunit of DNA polymerase zeta (yeast) hs
HUGENEFL:S82075_AT REV3-like, catalytic subunit of DNA polymerase zeta (yeast) hs
U133_X3P:HS2.434194.1.S1_3P_X_AT REV3-like, catalytic subunit of DNA polymerase zeta (yeast) hs
U133_X3P:HS2.434194.1.S1_3P_AT REV3-like, catalytic subunit of DNA polymerase zeta (yeast) hs
U133_X3P:HS2.384997.1.S1_3P_AT REV3-like, catalytic subunit of DNA polymerase zeta (yeast) hs
U133_X3P:HS.46764.0.A1_3P_AT REV3-like, catalytic subunit of DNA polymerase zeta (yeast) hs
U133_X3P:HS.117927.0.A1_3P_AT REV3-like, catalytic subunit of DNA polymerase zeta (yeast) hs
HG-U133_PLUS_2:1562566_AT REV3-like, catalytic subunit of DNA polymerase zeta (yeast) hs
HG-U133_PLUS_2:1566285_AT REV3-like, catalytic subunit of DNA polymerase zeta (yeast) hs
HG-U133_PLUS_2:238736_AT REV3-like, catalytic subunit of DNA polymerase zeta (yeast) hs
HG-U133B:238736_AT REV3-like, catalytic subunit of DNA polymerase zeta (yeast) hs
HG-U95B:46820_AT REV3-like, catalytic subunit of DNA polymerase zeta (yeast) hs
HG-U95B:46821_G_AT REV3-like, catalytic subunit of DNA polymerase zeta (yeast) hs
HG-U95C:53168_R_AT REV3-like, catalytic subunit of DNA polymerase zeta (yeast) hs
HG-U95E:81258_AT REV3-like, catalytic subunit of DNA polymerase zeta (yeast) hs
HG-U133_PLUS_2:1566284_AT REV3-like, catalytic subunit of DNA polymerase zeta (yeast) hs
HG-U95B:43128_R_AT REV3-like, catalytic subunit of DNA polymerase zeta (yeast) hs
HG-U95B:47701_AT REV3-like, catalytic subunit of DNA polymerase zeta (yeast) hs
HG-U95D:73966_R_AT REV3-like, catalytic subunit of DNA polymerase zeta (yeast) hs
HG-U95E:84453_AT REV3-like, catalytic subunit of DNA polymerase zeta (yeast) hs
HU35KSUBB:RC_W90752_AT REV3-like, catalytic subunit of DNA polymerase zeta (yeast) hs
HU35KSUBC:RC_N32120_AT REV3-like, catalytic subunit of DNA polymerase zeta (yeast) hs
HU35KSUBD:RC_AA371618_AT REV3-like, catalytic subunit of DNA polymerase zeta (yeast) hs
U133_X3P:HS2.384997.1.A1_3P_AT REV3-like, catalytic subunit of DNA polymerase zeta (yeast) hs
MU11KSUBA:D78644_S_AT REV3-like, catalytic subunit of DNA polymerase zeta RAD54 like (S. cerevisiae) mm
MG-U74AV2:103457_AT REV3-like, catalytic subunit of DNA polymerase zeta RAD54 like (S. cerevisiae) mm
MOE430A:1426194_X_AT REV3-like, catalytic subunit of DNA polymerase zeta RAD54 like (S. cerevisiae) mm
MOUSE430A_2:1426194_X_AT REV3-like, catalytic subunit of DNA polymerase zeta RAD54 like (S. cerevisiae) mm
MOUSE430_2:1426194_X_AT REV3-like, catalytic subunit of DNA polymerase zeta RAD54 like (S. cerevisiae) mm
MOE430A:1451960_A_AT REV3-like, catalytic subunit of DNA polymerase zeta RAD54 like (S. cerevisiae) mm
MOUSE430A_2:1451960_A_AT REV3-like, catalytic subunit of DNA polymerase zeta RAD54 like (S. cerevisiae) mm
MOUSE430_2:1451960_A_AT REV3-like, catalytic subunit of DNA polymerase zeta RAD54 like (S. cerevisiae) mm
MOE430A:1424632_A_AT REV3-like, catalytic subunit of DNA polymerase zeta RAD54 like (S. cerevisiae) mm
MOUSE430A_2:1424632_A_AT REV3-like, catalytic subunit of DNA polymerase zeta RAD54 like (S. cerevisiae) mm
MOUSE430_2:1424632_A_AT REV3-like, catalytic subunit of DNA polymerase zeta RAD54 like (S. cerevisiae) mm
RG-U34C:RC_AI236669_AT REV3-like, catalytic subunit of DNA polymerase zeta RAD54 like (S. cerevisiae) (predicted) rn
RAE230A:1372266_AT REV3-like, catalytic subunit of DNA polymerase zeta RAD54 like (S. cerevisiae) (predicted) rn
RAT230_2:1372266_AT REV3-like, catalytic subunit of DNA polymerase zeta RAD54 like (S. cerevisiae) (predicted) rn
RAE230B:1398128_AT REV3-like, catalytic subunit of DNA polymerase zeta RAD54 like (S. cerevisiae) (predicted) rn
RAT230_2:1398128_AT REV3-like, catalytic subunit of DNA polymerase zeta RAD54 like (S. cerevisiae) (predicted) rn
RAE230B:1378618_AT REV3-like, catalytic subunit of DNA polymerase zeta RAD54 like (S. cerevisiae) (predicted) rn
RAT230_2:1378618_AT REV3-like, catalytic subunit of DNA polymerase zeta RAD54 like (S. cerevisiae) (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6260 DNA replication inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
166 nucleotide binding inferred from electronic annotation QuickGO AmiGO
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
3887 DNA-directed DNA polymerase activity inferred from electronic annotation QuickGO AmiGO
8408 3'-5' exonuclease activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_498248 Y37B11A.2 [Caenorhabditis elegans] 0.0
blast AAK31564 Hypothetical protein Y37B11A.2 [Caenorhabditis elegans] 0.0
blast CAE64391 Hypothetical protein CBG09081 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006134 EMBL-EBI DNA polymerase B domain 6.3E-94
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 1.4E-25
Pfam IPR006134 EMBL-EBI DNA polymerase B domain 4.3E-106
Pfam IPR006134 EMBL-EBI DNA polymerase B domain 4.3E-106
Sequence
Target Sequence 
>C. ELEGANS:173280_AT
aagactccatggtgcattgaatgcgagcaaaatccagaagaactcgctctagctctagtt
caattgggacgagagagtcgtgctagatcccaaattatacaatattgcacaagctgtcaa
tcttccagtcaacgtcttggcgaagatcaagtagtcgattgtgccaactttacatgtcta
ctccggcagactatgtcaattatggatcgttcaagaaccgcgtcagttctgactgcaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGACTCCATGGTGCATTGAATGCG 551 153 60 Antisense
TCCAGAAGAACTCGCTCTAGCTCTA 683 587 92 Antisense
CTCTAGCTCTAGTTCAATTGGGACG 473 227 106 Antisense
GAGAGAGTCGTGCTAGATCCCAAAT 470 395 130 Antisense
GCACAAGCTGTCAATCTTCCAGTCA 467 317 166 Antisense
TCCAGTCAACGTCTTGGCGAAGATC 536 583 183 Antisense
GATCAAGTAGTCGATTGTGCCAACT 149 423 204 Antisense
TGTGCCAACTTTACATGTCTACTCC 497 555 219 Antisense
ATGTCTACTCCGGCAGACTATGTCA 659 47 233 Antisense
ATGGATCGTTCAAGAACCGCGTCAG 396 49 261 Antisense
GAACCGCGTCAGTTCTGACTGCACA 199 347 274 Antisense
Sequence Source Affymetrix Proprietary Database