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[173277_at]

Description CEC9363_rc /REP_DB=TREMBL Accession /GB=C10936 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk160g9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 54      6grp_high1_10_10 > 45      4grp_highest_8_8 > 46      4grp_high_8_8 > 02      6grp_highest_nonorm > 37      6grp_total > 46      4grp_total > 14      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8632
1 2 3 4 range
A 6452.6
(0.7)
P 		1804.8
(-2.6)
P 		1244.5
(-3)
P 		9801.8
(3)
P 		8557
B 7072.3
(1.6)
P 		1908.3
(-2.4)
P 		1170.1
(-3)
P 		8833.1
(3)
P 		7663
C 6397
(0.8)
P 		1703.5
(-2.8)
P 		1470.8
(-3)
P 		9339.7
(3)
P 		7869
avr 6640.6
(1) 		1805.5
(-2.6) 		1295.1
(-3) 		9324.9
(3) 		8030

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4776
1 2 3 4 5 6 range
A 4114.8
(-1.9)
P 		8028.9
(3)
P 		3253
(-3)
P 		6913
(1.6)
P 		3992.4
(-2.1)
P 		7212.8
(2)
P 		4776
B 3911.6
(-1.7)
P 		5144.6
(1.6)
P 		3808.6
(-2)
P 		5686.7
(3)
P 		3420.1
(-3)
P 		5506.5
(2.5)
P 		2267
C 5790.7
(1.5)
P 		6570.6
(3)
P 		6015.1
(1.9)
P 		4123.9
(-1.7)
P 		3450
(-3)
P 		5223.6
(0.4)
P 		3121
avr 4605.7
(-1) 		6581.4
(3) 		4358.9
(-1.5) 		5574.5
(1) 		3620.8
(-3) 		5981
(1.8) 		2961
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2078
1 2 3 4 range
A 2349.4
(3)
P 		391.8
(-2.8)
P 		325.3
(-3)
P 		1434.8
(0.3)
P 		2024
B 2255.3
(3)
P 		471.3
(-2.4)
P 		271.1
(-3)
P 		1882.3
(1.9)
P 		1984
C 2117.6
(3)
P 		489.8
(-3)
P 		512.6
(-2.9)
P 		1574.8
(1)
P 		1628
avr 2240.8
(3) 		451
(-2.7) 		369.7
(-3) 		1630.6
(1) 		1871

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2147
1 2 3 4 5 6 range
A 758.5
(-2.9)
P 		2855.5
(3)
P 		708.4
(-3)
P 		1753.3
(-0.1)
P 		1204.7
(-1.6)
P 		1756.1
(-0.1)
P 		2147
B 1361.1
(-0.7)
P 		1712.4
(1.2)
P 		924.8
(-3)
P 		1506.2
(0.1)
P 		1389.5
(-0.5)
P 		2053.3
(3)
P 		1129
C 2146.4
(3)
P 		2004.9
(2.4)
P 		1530.9
(0.2)
P 		829.3
(-3)
P 		1116.4
(-1.7)
P 		1748.6
(1.2)
P 		1317
avr 1422
(-1.1) 		2190.9
(3) 		1054.7
(-3) 		1362.9
(-1.4) 		1236.9
(-2) 		1852.7
(1.2) 		1136
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173277_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27831
Sequence Type Exemplar sequence
Representative Public ID CEC9363 NCBI
Target Description CEC9363_rc /REP_DB=TREMBL Accession /GB=C10936 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk160g9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) CEC9363
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
CEC9363 CEC9363_rc /REP_DB=TREMBL Accession /GB=C10936 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk160g9 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_073015 8/11 Cross Hyb Matching Probes None
SNAP00000012087 7/11 Cross Hyb Matching Probes None
SNAP00000012088 8/11 Cross Hyb Matching Probes None
K07B1.8 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Sequence
Target Sequence 
>C. ELEGANS:173277_AT
cttctctggatggcgattcgggactggagatgatgcaccaacgattggaatttggatggt
tcgggagctgctgtggatggcgaatcgggattggaatgatacaccaacgattaaaatttg
gatggttcgggagcttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTCTCTGGATGGCGATTCGGGACT 421 219 29 Antisense
GATGGCGATTCGGGACTGGAGATGA 250 407 37 Antisense
GATTCGGGACTGGAGATGATGCACC 151 433 43 Antisense
GATGCACCAACGATTGGAATTTGGA 40 385 60 Antisense
GAATTTGGATGGTTCGGGAGCTGCT 500 323 76 Antisense
TGGTTCGGGAGCTGCTGTGGATGGC 574 549 85 Antisense
CGGGAGCTGCTGTGGATGGCGAATC 615 243 90 Antisense
GCTGCTGTGGATGGCGAATCGGGAT 282 297 95 Antisense
GCGAATCGGGATTGGAATGATACAC 622 287 108 Antisense
GGAATGATACACCAACGATTAAAAT 118 531 121 Antisense
AAATTTGGATGGTTCGGGAGCTTCT 9 115 142 Antisense
Sequence Source Affymetrix Proprietary Database