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[173275_s_at]

Description CEC4273_rc /REP_DB=TREMBL Accession /GB=C10427 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk146f9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 15      6grp_high1_10_10 > 40      4grp_highest_8_8 > 14      4grp_high_8_8 > 22      6grp_highest_nonorm > 09      6grp_total > 42      4grp_total > 16      6grp_highest_sub > 03      6grp_cgc > 93      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23542
1 2 3 4 range
A 25053.6
(-3)
P 		34261.9
(-0.6)
P 		31018
(-1.4)
P 		47625.5
(3)
P 		22572
B 28137.8
(-3)
P 		28620.7
(-2.6)
P 		33841.1
(1.8)
P 		35264.9
(3)
P 		7127
C 24083.1
(-3)
P 		26280.7
(-2.3)
P 		25305.5
(-2.6)
P 		43866
(3)
P 		19783
avr 25758.2
(-3) 		29721.1
(-1.6) 		30054.9
(-1.4) 		42252.1
(3) 		16494

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11699
1 2 3 4 5 6 range
A 27026.2
(3)
P 		21070.2
(-3)
P 		26386.7
(2.4)
P 		25747.2
(1.7)
P 		21064.3
(-3)
P 		21942
(-2.1)
P 		5962
B 24310.6
(0.2)
P 		21831.6
(-1.1)
P 		29751.4
(3)
P 		22749.6
(-0.6)
P 		18052.7
(-3)
P 		20292.9
(-1.9)
P 		11699
C 20664.9
(-2.5)
P 		23568.8
(1)
P 		25268.7
(3)
P 		24741.1
(2.4)
P 		20879.1
(-2.2)
P 		20219.5
(-3)
P 		5049
avr 24000.6
(0.4) 		22156.9
(-1.2) 		27135.6
(3) 		24412.6
(0.7) 		19998.7
(-3) 		20818.1
(-2.3) 		7137
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2151
1 2 3 4 range
A 9122
(3)
P 		7437.3
(-1.7)
P 		8108.7
(0.2)
P 		6971.4
(-3)
P 		2151
B 8972.9
(3)
P 		7068.7
(-3)
P 		7841.8
(-0.6)
P 		7515
(-1.6)
P 		1904
C 7972.2
(-0.6)
P 		7555.8
(-2.3)
P 		8819.8
(3)
P 		7396.5
(-3)
P 		1423
avr 8689
(3) 		7353.9
(-2.7) 		8256.8
(1.1) 		7294.3
(-3) 		1395

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3483
1 2 3 4 5 6 range
A 4982.1
(-3)
P 		7493.6
(3)
P 		5746.5
(-1.2)
P 		6530.1
(0.7)
P 		6356.3
(0.3)
P 		5342.2
(-2.1)
P 		2512
B 8458.9
(3)
P 		7266.8
(0.1)
P 		7224.5
(-0)
P 		6025.6
(-3)
P 		7334.6
(0.2)
P 		7567.1
(0.8)
P 		2433
C 7659.6
(3)
P 		7191.6
(2)
P 		6431.3
(0.3)
P 		4975.5
(-3)
P 		6756.2
(1)
P 		6768.6
(1)
P 		2684
avr 7033.5
(1.8) 		7317.3
(3) 		6467.4
(-0.5) 		5843.7
(-3) 		6815.7
(1) 		6559.3
(-0.1) 		1474
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173275_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27734
Sequence Type Exemplar sequence
Representative Public ID CEC4273 NCBI
Target Description CEC4273_rc /REP_DB=TREMBL Accession /GB=C10427 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk146f9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065830(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065830 NCBI Caenorhabditis elegans Ribosomal Protein, Large subunit family member (rpl-23) (rpl-23) mRNA, complete cds. 11/11 None
SNAP00000008877 ENSEMBL cdna:SNAP chromosome:CEL140:III:5705553:5706071:-1 11/11 None
GENEFINDER00000008893 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5705553:5708563:-1 11/11 None
B0336.10.1 ENSEMBL cdna:known chromosome:CEL140:III:5705470:5706076:-1 gene:B0336.10 11/11 None
B0336.10.3 ENSEMBL cdna:known chromosome:CEL140:III:5705470:5706078:-1 gene:B0336.10 11/11 None
B0336.10.2 ENSEMBL cdna:known chromosome:CEL140:III:5705475:5706078:-1 gene:B0336.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5705510-5705987(-) 82.97 82.97
Public Domain and Genome References
Gene Title
Gene Symbol rpl-23
Ensembl B0336.10
Entrez Gene 175796 Entrez gene
SwissProt P48158 EMBL-EBI
WormBase CE00778 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:258569_AT 60S ribosomal protein L23 (RPL23C) at
CANINE:1583303_S_AT ribosomal protein L23 cfa
CANINE_2:CFA.3547.1.A1_S_AT ribosomal protein L23 cfa
CANINE_2:CFA.3547.1.A1_AT ribosomal protein L23 cfa
CANINE:1594664_AT Ribosomal protein L23 cfa
DROSOPHILA_2:1634764_AT Ribosomal protein L23 dm
DROSGENOME1:143582_AT Ribosomal protein L23 dm
HG-U133_PLUS_2:215224_AT ribosomal protein L23 hs
HG-U133A_2:215224_AT ribosomal protein L23 hs
HG-U133A:215224_AT ribosomal protein L23 hs
HG-U133_PLUS_2:200888_S_AT ribosomal protein L23 hs
HG-U133A_2:200888_S_AT ribosomal protein L23 hs
HG-U133A:200888_S_AT ribosomal protein L23 hs
HG-FOCUS:200888_S_AT ribosomal protein L23 hs
HU35KSUBC:RC_C14071_F_AT ribosomal protein L23 hs
HUGENEFL:X55954_AT ribosomal protein L23 hs
U133_X3P:G4506604_3P_S_AT ribosomal protein L23 hs
U133_X3P:HS.322680.0.S1_3P_AT ribosomal protein L23 hs
HG-U95AV2:32394_S_AT ribosomal protein L23 hs
HG-U95AV2:32395_R_AT ribosomal protein L23 hs
HG-U95C:58947_S_AT ribosomal protein L23 hs
HG-U95E:73318_AT Ribosomal protein L23 hs
HG-U133A_2:214744_S_AT Ribosomal protein L23 hs
HG-U133_PLUS_2:214744_S_AT Ribosomal protein L23 hs
HG-U133A:214744_S_AT Ribosomal protein L23 hs
HG-U95B:44288_AT Ribosomal protein L23 hs
HU35KSUBD:RC_AA463199_AT Ribosomal protein L23 hs
MOE430A:1415701_X_AT ribosomal protein L23 mm
MOUSE430_2:1415701_X_AT ribosomal protein L23 mm
MOE430B:1415701_X_AT ribosomal protein L23 mm
MOUSE430A_2:1415701_X_AT ribosomal protein L23 mm
MU11KSUBA:AA432883_F_AT ribosomal protein L23 mm
MU11KSUBB:W54123_AT ribosomal protein L23 mm
MU11KSUBB:W54123_G_AT ribosomal protein L23 mm
MG-U74AV2:161498_AT ribosomal protein L23 mm
MOE430A:1460680_A_AT ribosomal protein L23 mm
MOUSE430A_2:1460680_A_AT ribosomal protein L23 mm
MOUSE430_2:1460680_A_AT ribosomal protein L23 mm
MOE430A:1422859_A_AT ribosomal protein L23 mm
MOUSE430A_2:1422859_A_AT ribosomal protein L23 mm
MOUSE430_2:1422859_A_AT ribosomal protein L23 mm
MOE430A:1454859_A_AT ribosomal protein L23 mm
MOUSE430A_2:1454859_A_AT ribosomal protein L23 mm
MOUSE430_2:1454859_A_AT ribosomal protein L23 mm
MU19KSUBA:TC25431_AT Ribosomal protein L23, mRNA (cDNA clone MGC:30994 IMAGE:5252035) mm
RG-U34A:X58200MRNA_G_AT ribosomal protein L23 rn
RG-U34A:X58200MRNA_AT ribosomal protein L23 rn
RG-U34C:RC_AI228624_AT ribosomal protein L23 rn
RAE230A:1398885_AT ribosomal protein L23 rn
RAT230_2:1398885_AT ribosomal protein L23 rn
YEAST_2:1777227_AT Protein component of the large (60S) ribosomal subunit, identical to Rpl23Bp and has similarity to E. coli L14 and rat L23 ribosomal proteins Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast T15338 hypothetical protein B0336.11 - Caenorhabditis elegans 1.0E-135
blast AAK18858 Hypothetical protein B0336.11a [Caenorhabditis elegans] ref|NP_498232.2| B0336.11a [Caenorhabditis elegans] 1.0E-108
blast CAE64324 Hypothetical protein CBG09002 [Caenorhabditis briggsae] 1.0E-103
blast AAK18857 Ribosomal protein, large subunit protein 23 [Caenorhabditis elegans] ref|NP_498231.1| Ribosomal Protein, Large subunit family member (rpl-23) [Caenorhabditis elegans] sp|P48158|RL23_CAEEL 60S ribosomal protein L23 emb|CAE64323.1| Hypothetical protein CBG09001 [Caenorhabditis briggsae] 4.0E-75
blast Q93140 60S ribosomal protein L23 gb|AAB07464.1| 60S ribosomal protein 4.0E-68
Protein Domains
Database ID Description E-Value
Pfam IPR000218 EMBL-EBI Ribosomal protein L14b/L23e 1.2E-57
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 4.4E-17
Pfam IPR000218 EMBL-EBI Ribosomal protein L14b/L23e 1.2E-57
Sequence
Target Sequence 
>C. ELEGANS:173275_S_AT
gccaagaacttgttcgtcatctccgtttacggaatccgtggacgtctcaacagactgcca
agcgctggagttggagacatgttcgtctgctccgtcaagaagggaaagccagagctcaga
aagaaggttctccaaggagtcgtcatcagacagcgcaagcagttccgcagaaaggacggt
accttcatctacttcgaggataacgcaggagttatcgtcaacaacaagggagaaatgaag
ggatccgccatcaccggaccagttgccaaggagtgcgctgatctctggccaagaatcgct
gctaacgctggatcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCAAGAACTTGTTCGTCATCTCCG 682 277 92 Antisense
TACGGAATCCGTGGACGTCTCAACA 164 647 119 Antisense
AACAGACTGCCAAGCGCTGGAGTTG 478 137 140 Antisense
GGAGTCGTCATCAGACAGCGCAAGC 386 517 227 Antisense
GACAGCGCAAGCAGTTCCGCAGAAA 155 369 240 Antisense
CGGTACCTTCATCTACTTCGAGGAT 519 231 268 Antisense
AAATGAAGGGATCCGCCATCACCGG 636 119 324 Antisense
ATCACCGGACCAGTTGCCAAGGAGT 539 27 341 Antisense
GTTGCCAAGGAGTGCGCTGATCTCT 323 441 353 Antisense
GCTGATCTCTGGCCAAGAATCGCTG 695 293 368 Antisense
AAGAATCGCTGCTAACGCTGGATCC 528 151 382 Antisense
Sequence Source Affymetrix Proprietary Database