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[173274_s_at]

Description C58430_rc /REP_DB=TREMBL Accession /GB=C58430 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk367c12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 82      6grp_high1_10_10 > 38      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 60      6grp_total > 38      4grp_total > 13      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 408
1 2 3 4 range
A 423.2
(1.6)
P 		245.6
(-1.2)
P 		126.9
(-3)
P 		513.2
(3)
P 		386
B 343.5
(0.7)
P 		131.5
(-2.8)
P 		122
(-3)
P 		483.2
(3)
P 		361
C 326.5
(-0)
P 		171.5
(-2.3)
P 		127.8
(-3)
P 		529.9
(3)
P 		402
avr 364.4
(0.7) 		182.9
(-2.1) 		125.6
(-3) 		508.8
(3) 		383

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 637
1 2 3 4 5 6 range
A 707.1
(3)
P 		269.8
(-2.2)
P 		296.4
(-1.9)
P 		240.2
(-2.5)
P 		201.1
(-3)
P 		492.5
(0.5)
P 		506
B 782.8
(3)
P 		304.5
(-2)
P 		250.3
(-2.5)
P 		203.7
(-3)
P 		354.4
(-1.4)
P 		535.7
(0.4)
P 		579
C 714.2
(3)
P 		283.9
(-1.5)
P 		220.1
(-2.2)
P 		145.7
(-3)
P 		309.6
(-1.3)
P 		546.2
(1.2)
P 		569
avr 734.7
(3) 		286.1
(-2) 		255.6
(-2.3) 		196.5
(-3) 		288.4
(-2) 		524.8
(0.7) 		538
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 126
1 2 3 4 range
A 154.1
(3)
P 		53.3
(-2)
P 		33.2
(-3)
P 		75.1
(-0.9)
P 		121
B 109.6
(3)
P 		32.5
(-2.7)
P 		28.3
(-3)
P 		103
(2.5)
P 		81
C 108.1
(3)
P 		49.3
(-2.6)
P 		44.6
(-3)
P 		89.4
(1.2)
P 		64
avr 123.9
(3) 		45
(-2.3) 		35.4
(-3) 		89.2
(0.6) 		89

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 243
1 2 3 4 5 6 range
A 130.4
(3)
P 		96
(0)
P 		64.6
(-2.7)
P 		60.9
(-3)
P 		60.7
(-3)
P 		119.9
(2.1)
P 		70
B 272.4
(3)
P 		101.3
(-1.7)
P 		60.8
(-2.8)
P 		54
(-3)
P 		144
(-0.5)
P 		199.8
(1)
P 		218
C 264.7
(3)
P 		86.6
(-1.5)
P 		56
(-2.3)
P 		29.3
(-3)
P 		100.2
(-1.2)
P 		182.8
(0.9)
P 		235
avr 222.5
(3) 		94.6
(-1.4) 		60.5
(-2.6) 		48.1
(-3) 		101.6
(-1.2) 		167.5
(1.1) 		174
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173274_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27725
Sequence Type Exemplar sequence
Representative Public ID C58430 NCBI
Target Description C58430_rc /REP_DB=TREMBL Accession /GB=C58430 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk367c12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075591(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075591 NCBI Caenorhabditis elegans W01F3.2 (W01F3.2) mRNA, complete cds. 11/11 A 
GENEFINDER00000024493 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20658449:20659989:1 11/11 None
W01F3.2 ENSEMBL cdna:known chromosome:CEL140:V:20658430:20660020:1 gene:W01F3.2 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000024489 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20659322-20660020(+) 99.04 99.04
Public Domain and Genome References
Gene Title
Ensembl W01F3.2
Entrez Gene 180351 Entrez gene
SwissProt O62390 EMBL-EBI
WormBase CE16530 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07291 Hypothetical protein W01F3.2 [Caenorhabditis elegans] ref|NP_507992.1| W01F3.2 [Caenorhabditis elegans] 1.0E-173
blast CAE61691 Hypothetical protein CBG05638 [Caenorhabditis briggsae] 1.0E-138
blast NP_503790 C31B8.8 [Caenorhabditis elegans] gb|AAG23982.2| Hypothetical protein C31B8.8 [Caenorhabditis elegans] dbj|BAA28351.1| matrix metalloproteinase [Caenorhabditis elegans] 9.0E-30
Sequence
Target Sequence 
>C. ELEGANS:173274_S_AT
acaccggaagctgcagttagatggcataataaacatcagttattgctctcgaacggtggt
aaattcgcattatatgatgaatactggaacaaatctttgatgaccggaaggactgaaagc
tattttgagaatcttcccgaccgtgtccggggtatttccacgtggaattcgcaaggacat
gcgcacatttacacgcaatctctagnnnnngaatacgattcggaaatgaagaaagtgaca
ggcgatggagtaccacttggcgatt

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACACCGGAAGCTGCAGTTAGATGGC 416 109 15 Antisense
AAACATCAGTTATTGCTCTCGAACG 638 127 45 Antisense
GTTATTGCTCTCGAACGGTGGTAAA 462 445 53 Antisense
AACGGTGGTAAATTCGCATTATATG 524 143 66 Antisense
GACCGGAAGGACTGAAAGCTATTTT 533 379 116 Antisense
TATTTTGAGAATCTTCCCGACCGTG 39 617 135 Antisense
TGTCCGGGGTATTTCCACGTGGAAT 63 557 158 Antisense
CCACGTGGAATTCGCAAGGACATGC 467 271 172 Antisense
GCAAGGACATGCGCACATTTACACG 680 321 185 Antisense
TGCGCACATTTACACGCAATCTCTA 461 583 194 Antisense
GGCGATGGAGTACCACTTGGCGATT 420 541 255 Antisense
Sequence Source Affymetrix Proprietary Database