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[173273_at] Drosophila chaoptin protein like

Description CEC9713_rc /REP_DB=TREMBL Accession /GB=C10971 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk161e1 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 29      6grp_total > 29      4grp_total > 50      6grp_cgc > 90      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 175
1 2 3 4 range
A 8.4
(-3)
A 		178.3
(3)
P 		138.3
(1.6)
P 		14.3
(-2.8)
A 		170
B 21.5
(-2.9)
A 		58.8
(2.4)
A 		63.2
(3)
A 		21
(-3)
A 		42
C 3.4
(-3)
A 		68.8
(3)
P 		40.4
(0.4)
P 		4.5
(-2.9)
A 		65
avr 11.1
(-3) 		102
(3) 		80.6
(1.6) 		13.3
(-2.9) 		91

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 66.6
(0.7)
A 		78.9
(2)
P 		47.2
(-1.3)
M 		31.3
(-3)
A 		88
(3)
P 		70.7
(1.2)
A 		57
B 93.5
(3)
P 		55.3
(-1.1)
A 		87.8
(2.4)
P 		37.8
(-3)
A 		73.3
(0.8)
A 		62.1
(-0.4)
P 		56
C 91.2
(3)
A 		41
(-3)
A 		84.7
(2.2)
A 		43.3
(-2.7)
P 		79.4
(1.6)
A 		41.3
(-3)
A 		50
avr 83.8
(3) 		58.4
(-0.3) 		73.2
(1.6) 		37.5
(-3) 		80.2
(2.5) 		58
(-0.3) 		46
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 3.1
(-2.8)
A 		38.7
(3)
P 		36.1
(2.6)
P 		2.1
(-3)
A 		37
B 6.9
(-1.6)
A 		14.5
(2.9)
A 		14.6
(3)
A 		4.5
(-3)
A 		10
C 1.1
(-2.9)
A 		19.8
(3)
P 		14.1
(1.2)
P 		0.8
(-3)
A 		19
avr 3.7
(-2.7) 		24.3
(3) 		21.6
(2.3) 		2.5
(-3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 12.3
(-1.7)
A 		28.1
(3)
P 		10.3
(-2.3)
M 		7.9
(-3)
A 		26.6
(2.6)
P 		17.2
(-0.2)
A 		20
B 32.5
(3)
P 		18.4
(-0.8)
A 		21.3
(0)
P 		10
(-3)
A 		29.8
(2.3)
A 		23.2
(0.5)
P 		23
C 33.8
(3)
A 		12.5
(-2.1)
A 		21.5
(0.1)
A 		8.7
(-3)
P 		25.7
(1.1)
A 		13.8
(-1.8)
A 		25
avr 26.2
(2.6) 		19.7
(0.5) 		17.7
(-0.1) 		8.9
(-3) 		27.4
(3) 		18.1
(-0) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173273_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27647
Sequence Type Exemplar sequence
Representative Public ID CEC9713 NCBI
Target Description CEC9713_rc /REP_DB=TREMBL Accession /GB=C10971 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk161e1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078025
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000043717 ENSEMBL cdna:SNAP chromosome:CEL140:X:14581720:14584081:1 None
GENEFINDER00000043724 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14581720:14584081:1 None
C44H4.3 ENSEMBL cdna:known chromosome:CEL140:X:14581575:14584289:1 gene:C44H4.3 A 
NM_078025 NCBI Caenorhabditis elegans SYnthetic lethal with Mec family member (sym-1) (sym-1) mRNA, complete cds. A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14583917-14584213(+) 85.76 85.76
Public Domain and Genome References
Gene Title Drosophila chaoptin protein like
Gene Symbol sym-1
Ensembl C44H4.3
Entrez Gene 181555 Entrez gene
SwissProt Q93374 EMBL-EBI
WormBase CE08724 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1631311_AT dm
DROSGENOME1:145589_AT dm
Protein Similarities
Method ID Description E-Value
blast CAB01865 Hypothetical protein C44H4.3 [Caenorhabditis elegans] ref|NP_510426.1| SYnthetic lethal with Mec family member (sym-1) [Caenorhabditis elegans] emb|CAB43345.1| SYM-1 protein [Caenorhabditis elegans] 0.0
blast CAE63201 Hypothetical protein CBG07556 [Caenorhabditis briggsae] 0.0
blast CAE63200 Hypothetical protein CBG07555 [Caenorhabditis briggsae] 9.0E-53
Protein Domains
Database ID Description E-Value
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0023
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.016
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.38
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.34
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.028
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.21
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.073
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0064
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 8.9E-5
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.028
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.013
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.061
Sequence
Target Sequence 
>C. ELEGANS:173273_AT
cccccaccaacattccattgggttggccacccaaggaaccgaagactgactctgtccgga
ggaggagttcagcaaggacgatgaagtagagactgttgagaccgccgagaagccagccag
acattagttttcacgaattattcattgtcctannnnnnngtatntnacaatactttcccc
aaatttcataacgtgtggttgtgacttgaatttactcagcatt

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCCCACCAACATTCCATTGGGTTG 161 261 65 Antisense
CAACATTCCATTGGGTTGGCCACCC 305 189 72 Antisense
ATTCCATTGGGTTGGCCACCCAAGG 464 5 76 Antisense
GGCCACCCAAGGAACCGAAGACTGA 368 543 89 Antisense
CCCAAGGAACCGAAGACTGACTCTG 52 259 94 Antisense
CCAGCCAGACATTAGTTTTCACGAA 486 273 177 Antisense
AGCCAGACATTAGTTTTCACGAATT 177 85 179 Antisense
TACTTTCCCCAAATTTCATAACGTG 694 643 235 Antisense
ATTTCATAACGTGTGGTTGTGACTT 415 13 247 Antisense
GTGTGGTTGTGACTTGAATTTACTC 82 489 257 Antisense
TTGTGACTTGAATTTACTCAGCATT 276 705 263 Antisense
Sequence Source Affymetrix Proprietary Database