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[173271_s_at] Drosophila chaoptin protein like

Description C53253_rc /REP_DB=TREMBL Accession /GB=C53253 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk360a10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 0      6grp_high1_10_10 > 08      6grp_highest_nonorm > 71      6grp_total > 19      4grp_total > 49      6grp_cgc > 51      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 873
1 2 3 4 range
A 1.4
(-3)
A 		680.6
(3)
P 		569.1
(2)
P 		2.2
(-3)
A 		679
B 1
(-3)
A 		874.4
(3)
P 		674.2
(1.6)
P 		2.2
(-3)
A 		873
C 16.9
(-3)
A 		686.4
(3)
P 		639.3
(2.6)
P 		22
(-3)
A 		670
avr 6.4
(-3) 		747.1
(3) 		627.5
(2) 		8.8
(-3) 		741

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 464
1 2 3 4 5 6 range
A 386.2
(3)
P 		375.5
(2.8)
P 		269.5
(0.6)
P 		374.7
(2.8)
P 		359.6
(2.5)
P 		91.5
(-3)
P 		295
B 555.9
(3)
P 		339.5
(-0.5)
P 		329.4
(-0.7)
P 		468.4
(1.6)
P 		329.7
(-0.7)
P 		184.2
(-3)
P 		372
C 502.4
(3)
P 		295.7
(-2.1)
P 		283.8
(-2.4)
P 		338.4
(-1.1)
P 		476.3
(2.4)
P 		260.9
(-3)
P 		242
avr 481.5
(3) 		336.9
(0.1) 		294.2
(-0.7) 		393.8
(1.3) 		388.5
(1.2) 		178.9
(-3) 		303
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 223
1 2 3 4 range
A 0.5
(-3)
A 		147.7
(3)
P 		148.8
(3)
P 		0.3
(-3)
A 		149
B 0.3
(-3)
A 		216
(3)
P 		156.2
(1.3)
P 		0.5
(-3)
A 		216
C 5.6
(-2.9)
A 		197.3
(2.3)
P 		222.8
(3)
P 		3.7
(-3)
A 		219
avr 2.1
(-3) 		187
(3) 		175.9
(2.6) 		1.5
(-3) 		186

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 171
1 2 3 4 5 6 range
A 71.2
(-0.4)
P 		133.5
(3)
P 		58.7
(-1)
P 		95
(0.9)
P 		108.5
(1.7)
P 		22.3
(-3)
P 		111
B 193.4
(3)
P 		113
(-0.9)
P 		80
(-2.5)
P 		124.1
(-0.3)
P 		133.9
(0.1)
P 		68.7
(-3)
P 		125
C 186.2
(3)
P 		90.2
(-1.9)
P 		72.2
(-2.8)
P 		68
(-3)
P 		154.1
(1.4)
P 		87.4
(-2)
P 		118
avr 150.3
(3) 		112.2
(0.5) 		70.3
(-2.3) 		95.7
(-0.6) 		132.2
(1.8) 		59.5
(-3) 		91
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173271_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27943
Sequence Type Exemplar sequence
Representative Public ID C53253 NCBI
Target Description C53253_rc /REP_DB=TREMBL Accession /GB=C53253 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk360a10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078024(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078024 NCBI Caenorhabditis elegans SYnthetic lethal with Mec family member (sym-5) (sym-5) mRNA, complete cds. 11/11 A 
SNAP00000043715 ENSEMBL cdna:SNAP chromosome:CEL140:X:14577952:14580749:1 11/11 None
GENEFINDER00000043729 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14578156:14580749:1 11/11 None
C44H4.2 ENSEMBL cdna:known chromosome:CEL140:X:14578007:14580830:1 gene:C44H4.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14580413-14580758(+) 91.64 91.64
Public Domain and Genome References
Gene Title Drosophila chaoptin protein like
Gene Symbol sym-5
Ensembl C44H4.2
Entrez Gene 181554 Entrez gene
SwissProt Q93373 EMBL-EBI
WormBase CE08723 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1632809_AT dm
DROSGENOME1:146784_AT dm
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from sequence similarity QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01864 Hypothetical protein C44H4.2 [Caenorhabditis elegans] ref|NP_510425.1| SYnthetic lethal with Mec family member (sym-5) [Caenorhabditis elegans] 0.0
blast CAE63200 Hypothetical protein CBG07555 [Caenorhabditis briggsae] 0.0
blast CAB01865 Hypothetical protein C44H4.3 [Caenorhabditis elegans] ref|NP_510426.1| SYnthetic lethal with Mec family member (sym-1) [Caenorhabditis elegans] emb|CAB43345.1| SYM-1 protein [Caenorhabditis elegans] 4.0E-51
blast CAB01865 Hypothetical protein C44H4.3 [Caenorhabditis elegans] ref|NP_510426.1| SYnthetic lethal with Mec family member (sym-1) [Caenorhabditis elegans] emb|CAB43345.1| SYM-1 protein [Caenorhabditis elegans] 8.0E-48
Protein Domains
Database ID Description E-Value
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.056
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.14
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.024
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.21
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0011
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.03
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.84
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0086
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 1.3E-4
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.016
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.12
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.056
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.14
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.024
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.21
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0011
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.03
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.84
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0086
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 1.3E-4
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.016
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.12
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.056
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.14
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.024
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.21
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0011
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.03
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.84
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0086
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 1.3E-4
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.016
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.12
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510425.1 1 654-676
C44H4.2 1 654-676
SNAP00000043715 1 689-711
GENEFINDER00000043729 1 621-643
Sequence
Target Sequence 
>C. ELEGANS:173271_S_AT
ttttcatttgcgttggcacagccgttattgtgctngttgtggttattgatggactttgta
tcagtaagcacagacagctacaattcgagaacacttattctgatagcagtgctgctagaa
ccagcgagtacatttcaactcaatacagacaaaattccctgcgtggcactggaggaagag
ttggacgatttgaagaatcaccagcntggatttacaatcctggatccagttattgcaatt
attaca

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTCATTTGCGTTGGCACAGCCGT 527 675 41 Antisense
GCGTTGGCACAGCCGTTATTGTGCT 568 291 50 Antisense
GGACTTTGTATCAGTAAGCACAGAC 499 523 91 Antisense
GCACAGACAGCTACAATTCGAGAAC 213 317 108 Antisense
ATTCGAGAACACTTATTCTGATAGC 628 9 123 Antisense
AGCAGTGCTGCTAGAACCAGCGAGT 181 77 145 Antisense
AGTACATTTCAACTCAATACAGACA 682 61 167 Antisense
CAATACAGACAAAATTCCCTGCGTG 564 179 181 Antisense
AATTCCCTGCGTGGCACTGGAGGAA 370 177 193 Antisense
GGATTTACAATCCTGGATCCAGTTA 360 509 248 Antisense
GGATCCAGTTATTGCAATTATTACA 103 513 262 Antisense
Sequence Source Affymetrix Proprietary Database