[Home] | [Total List]

[173268_s_at]

Description C38733_rc /REP_DB=TREMBL Accession /GB=C38733 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk497f11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 14      6grp_high1_10_10 > 30      4grp_highest_8_8 > 17      4grp_high_8_8 > 61      6grp_highest_nonorm > 07      6grp_total > 42      4grp_total > 59      6grp_cgc > 81      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7297
1 2 3 4 range
A 12008.1
(0.9)
P 		13384.1
(3)
P 		12761.9
(2)
P 		9506.7
(-3)
P 		3877
B 11855.8
(-1.3)
P 		13829.1
(0.6)
P 		16429.4
(3)
P 		10011.7
(-3)
P 		6418
C 12074.6
(2.1)
P 		12290.1
(2.5)
P 		12562
(3)
P 		9132.6
(-3)
P 		3429
avr 11979.5
(0.3) 		13167.8
(2) 		13917.8
(3) 		9550.3
(-3) 		4368

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6271
1 2 3 4 5 6 range
A 13627
(0.2)
P 		12860.6
(-0.6)
P 		16233.3
(3)
P 		12722.3
(-0.7)
P 		10615
(-3)
P 		12240.7
(-1.3)
P 		5618
B 13430.3
(0.6)
P 		13363.4
(0.5)
P 		15727.4
(3)
P 		12775.1
(-0.1)
P 		9962.4
(-3)
P 		10454.5
(-2.5)
P 		5765
C 11996.4
(-0.4)
P 		13047.6
(1.8)
P 		13654.8
(3)
P 		13026.8
(1.7)
P 		11715.8
(-1)
P 		10714.7
(-3)
P 		2940
avr 13017.9
(0) 		13090.5
(0.1) 		15205.2
(3) 		12841.4
(-0.2) 		10764.4
(-3) 		11136.6
(-2.5) 		4441
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2987
1 2 3 4 range
A 4372.2
(3)
P 		2905.3
(0)
P 		3336.2
(0.9)
P 		1391.6
(-3)
P 		2981
B 3780.7
(2.9)
P 		3415.5
(1.6)
P 		3807.1
(3)
P 		2133.5
(-3)
P 		1674
C 3997
(2.2)
P 		3533.5
(1.2)
P 		4378.3
(3)
P 		1539.9
(-3)
P 		2838
avr 4050
(3) 		3284.8
(1.1) 		3840.5
(2.5) 		1688.3
(-3) 		2362

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2161
1 2 3 4 5 6 range
A 2512
(-3)
P 		4573.9
(3)
P 		3535.3
(-0)
P 		3226.7
(-0.9)
P 		3203.2
(-1)
P 		2980.2
(-1.6)
P 		2062
B 4673.1
(3)
P 		4448.1
(2)
P 		3819.1
(-1)
P 		3383.7
(-3)
P 		4047.6
(0.1)
P 		3898.4
(-0.6)
P 		1289
C 4446.5
(3)
P 		3981.2
(1.5)
P 		3475.4
(-0.2)
P 		2619.7
(-3)
P 		3791.1
(0.8)
P 		3586.8
(0.2)
P 		1827
avr 3877.2
(0.8) 		4334.4
(3) 		3609.9
(-0.5) 		3076.7
(-3) 		3680.6
(-0.1) 		3488.5
(-1) 		1258
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173268_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27606
Sequence Type Exemplar sequence
Representative Public ID C38733 NCBI
Target Description C38733_rc /REP_DB=TREMBL Accession /GB=C38733 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk497f11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072232(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072232 NCBI Caenorhabditis elegans T05H4.12 (T05H4.12) mRNA, complete cds. 11/11 A 
SNAP00000040305 ENSEMBL cdna:SNAP chromosome:CEL140:V:6428990:6429704:-1 11/11 None
GENEFINDER00000040318 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6428990:6429923:-1 11/11 None
T05H4.12.1 ENSEMBL cdna:known chromosome:CEL140:V:6428787:6429706:-1 gene:T05H4.12 11/11 A 
T05H4.12.2 ENSEMBL cdna:known chromosome:CEL140:V:6428814:6429708:-1 gene:T05H4.12 11/11 A 
T05H4.12.3 ENSEMBL cdna:known chromosome:CEL140:V:6428902:6429792:-1 gene:T05H4.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6428901-6429576(-) 92.23 92.23
Public Domain and Genome References
Gene Title
Gene Symbol atp-4
Ensembl T05H4.12
Entrez Gene 179025 Entrez gene
SwissProt O16517 EMBL-EBI
WormBase CE13291 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
15986 ATP synthesis coupled proton transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16469 proton-transporting two-sector ATPase complex inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
46933 hydrogen-transporting ATP synthase activity, rotational mechanism inferred from electronic annotation QuickGO AmiGO
46961 hydrogen-transporting ATPase activity, rotational mechanism inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_504633 T05H4.12 [Caenorhabditis elegans] gb|AAB66018.1| Hypothetical protein T05H4.12 [Caenorhabditis elegans] 1.0E-55
blast CAE71876 Hypothetical protein CBG18931 [Caenorhabditis briggsae] 6.0E-54
Sequence
Target Sequence 
>C. ELEGANS:173268_S_AT
gaagctcccaactaactttgaagctgctaaggttgattctgcagttcaatccgctcttga
aggacaaacattggcttcgcttcttgaaggagtcaagaaggaccactctgaatatgttgc
ctcccgtgatgccaagaaagccgaacaagccgcccgtaatgctgccctcaagcaataa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCTCCCAACTAACTTTGAAGCT 181 343 120 Antisense
CTAACTTTGAAGCTGCTAAGGTTGA 215 225 131 Antisense
CTGCAGTTCAATCCGCTCTTGAAGG 454 237 158 Antisense
TCAATCCGCTCTTGAAGGACAAACA 382 633 165 Antisense
AGGACAAACATTGGCTTCGCTTCTT 558 55 180 Antisense
ACAAACATTGGCTTCGCTTCTTGAA 81 113 183 Antisense
ATTGGCTTCGCTTCTTGAAGGAGTC 135 3 189 Antisense
GAAGGAGTCAAGAAGGACCACTCTG 589 333 205 Antisense
GGACCACTCTGAATATGTTGCCTCC 290 523 219 Antisense
GCCAAGAAAGCCGAACAAGCCGCCC 212 277 250 Antisense
CCGTAATGCTGCCCTCAAGCAATAA 454 263 273 Antisense
Sequence Source Affymetrix Proprietary Database