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[173267_at]

Description CEK002A2R_rc /REP_DB=TREMBL Accession /GB=D27219 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk2a2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 04      6grp_high1_10_10 > 32      4grp_high_8_8 > 43      6grp_highest_nonorm > 80      6grp_total > 42      4grp_total > 52      6grp_high1_sub > 02_03      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 353
1 2 3 4 range
A 367.8
(1.3)
P 		464.6
(3)
P 		365.3
(1.3)
P 		114.3
(-3)
A 		350
B 296.8
(1)
P 		353.6
(3)
P 		182.4
(-2.9)
P 		180.5
(-3)
P 		173
C 370
(3)
P 		327
(2)
P 		316.3
(1.8)
P 		111.2
(-3)
A 		259
avr 344.9
(2.1) 		381.7
(3) 		288
(0.7) 		135.3
(-3) 		246

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 252
1 2 3 4 5 6 range
A 277.8
(0.9)
P 		287.1
(1.1)
P 		365.7
(3)
P 		234.4
(-0.1)
P 		287.6
(1.1)
P 		113.8
(-3)
P 		252
B 252.6
(2.8)
P 		184.3
(-0.3)
P 		244.7
(2.4)
P 		186.2
(-0.2)
P 		258.1
(3)
P 		121.9
(-3)
P 		136
C 218
(-0.8)
P 		288.7
(1)
P 		363
(3)
P 		198.5
(-1.4)
P 		346.1
(2.6)
P 		136.4
(-3)
P 		227
avr 249.5
(0.8) 		253.4
(0.9) 		324.5
(3) 		206.4
(-0.5) 		297.3
(2.2) 		124
(-3) 		201
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 117
1 2 3 4 range
A 133.9
(3)
P 		100.8
(1.3)
P 		95.5
(1)
P 		16.7
(-3)
A 		117
B 94.7
(3)
P 		87.3
(2.2)
P 		42.3
(-2.6)
P 		38.5
(-3)
P 		56
C 122.5
(3)
P 		94
(1.4)
P 		110.2
(2.3)
P 		18.7
(-3)
A 		104
avr 117
(3) 		94
(1.5) 		82.7
(0.8) 		24.6
(-3) 		92

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 51.2
(-1.1)
P 		102.1
(3)
P 		79.6
(1.2)
P 		59.5
(-0.4)
P 		86.8
(1.8)
P 		27.7
(-3)
P 		74
B 87.9
(1.3)
P 		61.3
(-1.4)
P 		59.4
(-1.6)
P 		49.3
(-2.6)
P 		104.9
(3)
P 		45.4
(-3)
P 		60
C 80.8
(0.4)
P 		88.1
(1)
P 		92.4
(1.4)
P 		39.9
(-3)
P 		112
(3)
P 		45.7
(-2.5)
P 		72
avr 73.3
(0.3) 		83.8
(1.3) 		77.1
(0.7) 		49.6
(-2) 		101.2
(3) 		39.6
(-3) 		62
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173267_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27938
Sequence Type Exemplar sequence
Representative Public ID CEK002A2R NCBI
Target Description CEK002A2R_rc /REP_DB=TREMBL Accession /GB=D27219 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk2a2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171647
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171647 NCBI Caenorhabditis elegans F52E4.1b (F52E4.1) mRNA, complete cds. None
F52E4.1b ENSEMBL cdna:known chromosome:CEL140:X:3089487:3092448:1 gene:F52E4.1 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3092140-3092351(+) 72.69 72.69
Public Domain and Genome References
Ensembl F52E4.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL65786 Hypothetical protein F52E4.1b [Caenorhabditis elegans] ref|NP_741742.1| F52E4.1b [Caenorhabditis elegans] 0.0
blast AAB54030 Hypothetical protein F52E4.1a [Caenorhabditis elegans] ref|NP_741743.1| F52E4.1a [Caenorhabditis elegans] 0.0
blast CAE68374 Hypothetical protein CBG14130 [Caenorhabditis briggsae] 0.0
Protein Families
Method ID Description E-Value
ec ACCD_ECOLI (P08193) Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta (EC 6.4.1.2) (ACCase beta chain) 1.0E-79
ec ACCA_ECOLI (P30867) Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha (EC 6.4.1.2) 4.0E-6
Protein Domains
Database ID Description E-Value
Pfam IPR000022 EMBL-EBI Carboxyl transferase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:173267_AT
accagaagttggaggacccatgggagaaacncggaaacattccactctaaatttccaaca
ctaaccaccccgccttaatccatactattatgtttccatttacaccggcctgctcggtat
ttgacgtgtcttacttgtgaattttcatcccacataccaaatgctccatttgcgtactcc
aattgctcgagtattatttcca

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCAGAAGTTGGAGGACCCATGGGA 32 83 52 Antisense
TTCCACTCTAAATTTCCAACACTAA 647 697 91 Antisense
CCCCGCCTTAATCCATACTATTATG 106 261 119 Antisense
TATTATGTTTCCATTTACACCGGCC 245 663 137 Antisense
TTACACCGGCCTGCTCGGTATTTGA 681 681 151 Antisense
GCCTGCTCGGTATTTGACGTGTCTT 173 283 159 Antisense
GACGTGTCTTACTTGTGAATTTTCA 636 375 174 Antisense
GAATTTTCATCCCACATACCAAATG 284 325 190 Antisense
ATCCCACATACCAAATGCTCCATTT 529 37 198 Antisense
TCCATTTGCGTACTCCAATTGCTCG 471 591 216 Antisense
TCCAATTGCTCGAGTATTATTTCCA 254 587 229 Antisense
Sequence Source Affymetrix Proprietary Database