[Home] | [Total List]

[173266_at]

Description CEC0633_rc /REP_DB=TREMBL Accession /GB=C11063 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk163c1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 27      6grp_high1_10_10 > 62      4grp_highest_8_8 > 10      4grp_high_8_8 > 55      6grp_highest_nonorm > 65      6grp_total > 73      4grp_total > 56      6grp_highest_sub > 03_04      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1213
1 2 3 4 range
A 622.8
(-2.1)
P 		1204.3
(1.2)
P 		1531.6
(3)
P 		459.4
(-3)
P 		1072
B 780
(-3)
P 		1260.8
(0.2)
P 		1672.6
(3)
P 		822.3
(-2.7)
P 		893
C 856
(-2.8)
P 		1335.4
(0.7)
P 		1646.5
(3)
P 		833.2
(-3)
P 		813
avr 752.9
(-2.7) 		1266.8
(0.7) 		1616.9
(3) 		705
(-3) 		912

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 864
1 2 3 4 5 6 range
A 997.3
(-0.8)
P 		940.6
(-1.2)
P 		1508.4
(2.9)
P 		880.8
(-1.7)
P 		1517
(3)
P 		697.5
(-3)
P 		820
B 1349.2
(0.2)
P 		1191.2
(-1.9)
P 		1561
(3)
P 		1110.2
(-3)
P 		1421
(1.1)
P 		1308.6
(-0.4)
P 		451
C 908.9
(-3)
P 		1146.9
(-0.4)
P 		936.1
(-2.7)
P 		1461.9
(3)
P 		974.2
(-2.3)
P 		1342.7
(1.7)
P 		553
avr 1085.1
(-3) 		1092.9
(-2.8) 		1335.2
(3) 		1151
(-1.4) 		1304.1
(2.3) 		1116.3
(-2.3) 		250
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 507
1 2 3 4 range
A 226.8
(-0.1)
P 		261.4
(0.5)
P 		400.4
(3)
P 		67.2
(-3)
P 		333
B 248.7
(-0.9)
P 		311.4
(0.8)
P 		387.6
(3)
P 		175.2
(-3)
P 		212
C 283.4
(-1)
P 		383.9
(0.4)
P 		573.8
(3)
P 		140.5
(-3)
P 		433
avr 253
(-0.7) 		318.9
(0.5) 		453.9
(3) 		127.6
(-3) 		326

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 408
1 2 3 4 5 6 range
A 183.8
(-2.7)
P 		334.5
(0.4)
P 		328.5
(0.3)
P 		223.4
(-1.9)
P 		457.8
(3)
P 		169.8
(-3)
P 		288
B 469.4
(0.7)
P 		396.5
(-0.8)
P 		379.1
(-1.2)
P 		294.1
(-3)
P 		577.3
(3)
P 		488
(1.1)
P 		283
C 336.9
(-0.2)
P 		350
(0.2)
P 		238.3
(-3)
P 		294
(-1.4)
P 		315.2
(-0.8)
P 		449.5
(3)
P 		211
avr 330
(-1) 		360.3
(0) 		315.3
(-1.5) 		270.5
(-3) 		450.1
(3) 		369.1
(0.3) 		180
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173266_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27669
Sequence Type Exemplar sequence
Representative Public ID CEC0633 NCBI
Target Description CEC0633_rc /REP_DB=TREMBL Accession /GB=C11063 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk163c1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) CEC0633
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
CEC0633 CEC0633_rc /REP_DB=TREMBL Accession /GB=C11063 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk163c1 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_058726 5/11 Cross Hyb Matching Probes A 
Y54E10A.3 5/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3232057-3233228(+) 87.54 96.72
Sequence
Target Sequence 
>C. ELEGANS:173266_AT
cctatcaactgattgtgagccaacgagttatccaattcatttctctaattgtcatgtacc
caaaaccatactttcgctgatcccaagtttgccatatttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTATCAACTGATTGTGAGCCAACG 585 267 188 Antisense
GATTGTGAGCCAACGAGTTATCCAA 440 435 198 Antisense
GTGAGCCAACGAGTTATCCAATTCA 688 481 202 Antisense
GCCAACGAGTTATCCAATTCATTTC 215 279 206 Antisense
GAGTTATCCAATTCATTTCTCTAAT 229 399 212 Antisense
ATTTCTCTAATTGTCATGTACCCAA 612 15 226 Antisense
ATTGTCATGTACCCAAAACCATACT 222 5 235 Antisense
ATGTACCCAAAACCATACTTTCGCT 521 5 241 Antisense
ACCCAAAACCATACTTTCGCTGATC 124 91 245 Antisense
ATACTTTCGCTGATCCCAAGTTTGC 339 23 255 Antisense
GCTGATCCCAAGTTTGCCATATTTT 9 297 263 Antisense
Sequence Source Affymetrix Proprietary Database