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[173265_at]

Description CEK007F1R_rc /REP_DB=TREMBL Accession /GB=D34542 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk7f1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 70      6grp_high1_10_10 > 17      4grp_highest_8_8 > 33      4grp_high_8_8 > 50      6grp_highest_nonorm > 12      6grp_total > 18      4grp_total > 61      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2436
1 2 3 4 range
A 2928.5
(3)
P 		2059.3
(0.7)
P 		2215.7
(1.1)
P 		708.2
(-3)
P 		2220
B 2490.2
(3)
P 		2361.3
(2.4)
P 		2265.8
(2)
P 		1114.7
(-3)
P 		1376
C 3144.6
(3)
P 		1842.9
(-0.5)
P 		2335.3
(0.8)
P 		915.1
(-3)
P 		2230
avr 2854.4
(3) 		2087.8
(0.6) 		2272.3
(1.2) 		912.7
(-3) 		1942

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2112
1 2 3 4 5 6 range
A 2569.6
(3)
P 		2151.4
(1.1)
P 		2193.9
(1.3)
P 		1257.1
(-3)
P 		1962.2
(0.2)
P 		1444.1
(-2.1)
P 		1313
B 3142.8
(3)
P 		2113.3
(-1.3)
P 		2486.4
(0.3)
P 		1695
(-3)
P 		1910
(-2.1)
P 		2051.3
(-1.5)
P 		1448
C 3368.7
(3)
P 		1703.6
(-2.7)
P 		1608
(-3)
P 		1794.2
(-2.4)
P 		1938.6
(-1.9)
P 		1691
(-2.7)
P 		1761
avr 3027
(3) 		1989.4
(-1.3) 		2096.1
(-0.9) 		1582.1
(-3) 		1936.9
(-1.5) 		1728.8
(-2.4) 		1445
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 963
1 2 3 4 range
A 1066.3
(3)
P 		447
(-0.9)
P 		579.2
(-0)
P 		103.7
(-3)
P 		963
B 794.1
(3)
P 		583.2
(0.7)
P 		525
(0.1)
P 		237.5
(-3)
P 		557
C 1041
(3)
P 		529.8
(-0.5)
P 		813.9
(1.5)
P 		154.3
(-3)
P 		887
avr 967.1
(3) 		520
(-0.3) 		639.4
(0.5) 		165.2
(-3) 		802

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 930
1 2 3 4 5 6 range
A 473.7
(-0.9)
P 		765.1
(3)
P 		477.8
(-0.9)
P 		318.8
(-3)
P 		592.1
(0.7)
P 		351.6
(-2.6)
P 		446
B 1093.5
(3)
P 		703.4
(-0.6)
P 		603.8
(-1.6)
P 		448.9
(-3)
P 		776
(0)
P 		764.9
(-0.1)
P 		645
C 1248.6
(3)
P 		519.8
(-1.9)
P 		409.3
(-2.7)
P 		360.8
(-3)
P 		627.3
(-1.2)
P 		566.1
(-1.6)
P 		888
avr 938.6
(3) 		662.8
(0.1) 		497
(-1.7) 		376.2
(-3) 		665.1
(0.1) 		560.9
(-1) 		562
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173265_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27613
Sequence Type Exemplar sequence
Representative Public ID CEK007F1R NCBI
Target Description CEK007F1R_rc /REP_DB=TREMBL Accession /GB=D34542 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk7f1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171643(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171643 NCBI Caenorhabditis elegans Y71H10A.1a (phosphofructokinase) mRNA, complete cds. 9/11 None
Y71H10A.1a ENSEMBL cdna:known chromosome:CEL140:X:2940863:2945471:1 gene:Y71H10A.1 9/11 A 
Y71H10A.1b.2 ENSEMBL cdna:known chromosome:CEL140:X:2940863:2945445:1 gene:Y71H10A.1 9/11 None
Y71H10A.1b.1 ENSEMBL cdna:known chromosome:CEL140:X:2941320:2945445:1 gene:Y71H10A.1 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180583 2 1 NM_171643 173265_at (9)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2945090-2945421(+) 77.65 77.65
Public Domain and Genome References
Ensembl Y71H10A.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC67416 Hypothetical protein Y71H10A.1a [Caenorhabditis elegans] ref|NP_741738.1| Y71H10A.1a [Caenorhabditis elegans] 0.0
blast CAE58813 Hypothetical protein CBG02020 [Caenorhabditis briggsae] 0.0
blast AAL27269 Hypothetical protein Y71H10A.1b [Caenorhabditis elegans] ref|NP_741739.2| Y71H10A.1b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000023 EMBL-EBI Phosphofructokinase 1.0E-126
Pfam IPR000023 EMBL-EBI Phosphofructokinase 2.6E-20
Pfam IPR000023 EMBL-EBI Phosphofructokinase 2.4E-39
Pfam IPR000023 EMBL-EBI Phosphofructokinase 7.1E-99
Pfam IPR000023 EMBL-EBI Phosphofructokinase 2.6E-20
Pfam IPR000023 EMBL-EBI Phosphofructokinase 2.4E-39
Sequence
Target Sequence 
>C. ELEGANS:173265_AT
atctccaagaaggaagaccgatttgagcatcctcccccatcagagcaatggtggatggct
ctgcgtccaacttccccgtgttctcgctcgtcatcgttcgaccgttgaaagttctgcaat
tttggaatctgttgaagaagaaagcgccgactcacacatgttctgaaaagttttgatgtc
tccatagcgactacnnnnnnctgtctgtcataatacnnnnnnnngtgtgttacacttact
cggtattgtaaatgttctcatggtctatattaaatctttgctcgtctaaattgtctcnnn
nnactaagcttccataggttctcacnnnnnnnnnnnnnnnnnnnnnnngcacaagttgat
tgaagtcttagcccctatttc

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTCCAAGAAGGAAGACCGATTTG 637 1 22 Antisense
GGAAGACCGATTTGAGCATCCTCCC 228 529 33 Antisense
AAAAGTTTTGATGTCTCCATAGCGA 629 131 187 Antisense
GTTTTGATGTCTCCATAGCGACTAC 188 449 191 Antisense
GTGTGTTACACTTACTCGGTATTGT 335 485 246 Antisense
ACTCGGTATTGTAAATGTTCTCATG 438 99 259 Antisense
ATGTTCTCATGGTCTATATTAAATC 562 47 273 Antisense
GGTCTATATTAAATCTTTGCTCGTC 529 503 283 Antisense
AATCTTTGCTCGTCTAAATTGTCTC 185 171 294 Antisense
AAGTTGATTGAAGTCTTAGCCCCTA 332 149 374 Antisense
TGATTGAAGTCTTAGCCCCTATTTC 634 563 378 Antisense
Sequence Source Affymetrix Proprietary Database