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[173264_at] transketolase

Description CEK006H6R_rc /REP_DB=TREMBL Accession /GB=D27405 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk6h6 : 3prime end, single read.
Cluster 6grp_total > 43      4grp_total > 43      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 178
1 2 3 4 range
A 167.8
(-3)
A 		238.7
(3)
A 		193.2
(-0.9)
P 		172.5
(-2.6)
A 		71
B 152.9
(1.3)
A 		173.2
(3)
P 		102.9
(-3)
M 		155.6
(1.5)
P 		70
C 122.8
(-2.7)
A 		281
(3)
P 		133.5
(-2.4)
P 		115.7
(-3)
P 		165
avr 147.8
(-2.7) 		231
(3) 		143.2
(-3) 		147.9
(-2.7) 		88

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 151
1 2 3 4 5 6 range
A 143.5
(2.8)
A 		116.8
(1)
A 		134.1
(2.2)
P 		145.7
(3)
P 		58.2
(-3)
A 		101.5
(-0)
M 		88
B 175.4
(2.8)
M 		92
(-1.8)
A 		178.9
(3)
M 		75.7
(-2.7)
A 		103.6
(-1.2)
M 		70.6
(-3)
A 		108
C 118.2
(-0.9)
A 		154.7
(0.7)
P 		209.5
(3)
P 		69
(-3)
A 		146.2
(0.3)
P 		115.6
(-1)
P 		141
avr 145.7
(0.8) 		121.2
(-1.1) 		174.2
(3) 		96.8
(-2.9) 		102.7
(-2.5) 		95.9
(-3) 		78
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 61.1
(3)
A 		51.8
(1.4)
A 		50.5
(1.2)
P 		25.2
(-3)
A 		36
B 48.8
(3)
A 		42.8
(1.6)
P 		23.8
(-3)
M 		33.2
(-0.7)
P 		25
C 40.6
(-0.9)
A 		80.8
(3)
P 		46.5
(-0.4)
P 		19.5
(-3)
P 		61
avr 50.2
(1.5) 		58.5
(3) 		40.3
(-0.4) 		26
(-3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 26.4
(-0.8)
A 		41.6
(3)
A 		29.2
(-0.1)
P 		37
(1.9)
P 		17.6
(-3)
A 		24.7
(-1.2)
M 		24
B 61
(3)
M 		30.6
(-1.5)
A 		43.4
(0.4)
M 		20.1
(-3)
A 		42.1
(0.2)
M 		26.3
(-2.1)
A 		41
C 43.8
(1.6)
A 		47.2
(2.1)
P 		53.3
(3)
P 		13.9
(-3)
A 		47.3
(2.1)
P 		38.7
(0.8)
P 		39
avr 43.7
(3) 		39.8
(1.8) 		42
(2.5) 		23.7
(-3) 		35.7
(0.6) 		29.9
(-1.1) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173264_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27706
Sequence Type Exemplar sequence
Representative Public ID CEK006H6R NCBI
Target Description CEK006H6R_rc /REP_DB=TREMBL Accession /GB=D27405 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk6h6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069477
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F01G10.1.2 ENSEMBL cdna:known chromosome:CEL140:IV:10243562:10245723:1 gene:F01G10.1 A 
F01G10.1.4 ENSEMBL cdna:known chromosome:CEL140:IV:10243576:10245710:1 gene:F01G10.1 None
F01G10.1.3 ENSEMBL cdna:known chromosome:CEL140:IV:10243581:10245710:1 gene:F01G10.1 None
F01G10.1.1 ENSEMBL cdna:known chromosome:CEL140:IV:10243583:10245723:1 gene:F01G10.1 A 
SNAP00000013161 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10243587:10245624:1 None
GENEFINDER00000013175 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10243587:10245624:1 None
NM_069477 NCBI Caenorhabditis elegans F01G10.1 (transketolase) mRNA, complete cds. A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10245181-10245705(+) 84.46 84.46
Public Domain and Genome References
Gene Title transketolase
Ensembl F01G10.1
Entrez Gene 177906 Entrez gene
SwissProt O17759 EMBL-EBI
WormBase CE09163 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1627910_S_AT dm
DROSGENOME1:153373_AT dm
HG-U133_PLUS_2:223829_AT transketolase-like 2 hs
HG-U133B:223829_AT transketolase-like 2 hs
U133_X3P:G12053070_3P_AT transketolase-like 2 hs
HG-U95C:55429_AT transketolase-like 2 hs
HG-U95E:76626_AT transketolase-like 2 hs
MOE430B:1430434_AT transketolase-like 2 mm
MOUSE430_2:1430434_AT transketolase-like 2 mm
Protein Similarities
Method ID Description E-Value
blast CAB02889 Hypothetical protein F01G10.1 [Caenorhabditis elegans] ref|NP_501878.1| F01G10.1 [Caenorhabditis elegans] 0.0
blast CAE59901 Hypothetical protein CBG03385 [Caenorhabditis briggsae] 0.0
blast AAP59458 transketolase [Danio rerio] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR005476 EMBL-EBI Transketolase, C terminal 1.8E-34
Pfam IPR005475 EMBL-EBI Transketolase, central region 7.5E-54
Pfam IPR005474 EMBL-EBI Transketolase, N terminal 9.0E-91
Sequence
Target Sequence 
>C. ELEGANS:173264_AT
cttgtcggatcgggaagtcacctttgtccgaatcattggaggccccnnnnnnnnnnnnnn
nnnnnnnnnnnnnnncaaacgccacttgtatcgaatccaattcacccatcaagccaactg
gatggaaaagacccatccccgagcaccctctggaaagttggaggaccgagttgttactac
cgaagacccactacccacctggaggaatagg

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTGTCGGATCGGGAAGTCACCTTT 360 215 27 Antisense
GGATCGGGAAGTCACCTTTGTCCGA 426 509 33 Antisense
AAGTCACCTTTGTCCGAATCATTGG 500 157 41 Antisense
CTTTGTCCGAATCATTGGAGGCCCC 564 219 48 Antisense
CAAACGCCACTTGTATCGAATCCAA 135 193 102 Antisense
GTATCGAATCCAATTCACCCATCAA 181 455 114 Antisense
CCAATTCACCCATCAAGCCAACTGG 331 277 123 Antisense
ATTCACCCATCAAGCCAACTGGATG 697 7 126 Antisense
GGATGGAAAAGACCCATCCCCGAGC 391 513 146 Antisense
TCTGGAAAGTTGGAGGACCGAGTTG 704 603 175 Antisense
CCCACTACCCACCTGGAGGAATAGG 346 199 213 Antisense
Sequence Source Affymetrix Proprietary Database