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[173263_s_at]

Description CEC979_rc /REP_DB=TREMBL Accession /GB=C07979 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk172g10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 47      6grp_high1_10_10 > 83      4grp_highest_8_8 > 22      4grp_high_8_8 > 14      6grp_highest_nonorm > 38      6grp_total > 74      4grp_total > 09      6grp_high1_sub > 04      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8408
1 2 3 4 range
A 2965.2
(-3)
P 		3477.3
(-2.6)
P 		4370.9
(-2)
P 		11186.9
(3)
P 		8222
B 3113.6
(-3)
P 		3121.8
(-3)
P 		3523.9
(-2.6)
P 		10075.8
(3)
P 		6962
C 2778.7
(-3)
P 		2980.5
(-2.8)
P 		4364.5
(-1.5)
P 		9238.6
(3)
P 		6460
avr 2952.5
(-3) 		3193.2
(-2.8) 		4086.4
(-2.1) 		10167.1
(3) 		7215

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1574
1 2 3 4 5 6 range
A 6010.8
(1.3)
P 		5066.9
(-3)
P 		6259.4
(2.5)
P 		6377
(3)
P 		6279.2
(2.6)
P 		6209.4
(2.2)
P 		1310
B 5835.6
(0.4)
P 		5345.6
(-3)
P 		6220.9
(3)
P 		5944
(1.1)
P 		6084.5
(2.1)
P 		5479.7
(-2.1)
P 		875
C 5537.3
(-2.8)
P 		5491.4
(-3)
P 		6640.4
(3)
P 		6126.5
(0.3)
P 		5928.8
(-0.7)
P 		6432.9
(1.9)
P 		1149
avr 5794.6
(-0.2) 		5301.3
(-3) 		6373.6
(3) 		6149.2
(1.7) 		6097.5
(1.5) 		6040.7
(1.1) 		1072
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1392
1 2 3 4 range
A 1079.6
(-0.8)
P 		754.8
(-3)
P 		1142.6
(-0.4)
P 		1637.5
(3)
P 		883
B 992.9
(-2)
P 		771
(-3)
P 		816.6
(-2.8)
P 		2147.2
(3)
P 		1376
C 919.8
(-2.5)
P 		856.9
(-3)
P 		1521.2
(2.7)
P 		1557.8
(3)
P 		701
avr 997.4
(-1.8) 		794.2
(-3) 		1160.1
(-0.8) 		1780.8
(3) 		987

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1364
1 2 3 4 5 6 range
A 1108
(-3)
P 		1802.1
(2.3)
P 		1363.2
(-1.1)
P 		1617.4
(0.9)
P 		1894.8
(3)
P 		1511.8
(0.1)
P 		787
B 2030.5
(0.2)
P 		1779.3
(-1.3)
P 		1510.6
(-3)
P 		1574.4
(-2.6)
P 		2472.1
(3)
P 		2043.4
(0.3)
P 		962
C 2052.4
(2.3)
P 		1675.6
(-0.1)
P 		1690.1
(-0)
P 		1232
(-3)
P 		1918.5
(1.5)
P 		2153.5
(3)
P 		922
avr 1730.3
(-0.5) 		1752.3
(-0.3) 		1521.3
(-2.5) 		1474.6
(-3) 		2095.1
(3) 		1902.9
(1.1) 		621
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173263_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27746
Sequence Type Exemplar sequence
Representative Public ID CEC979 NCBI
Target Description CEC979_rc /REP_DB=TREMBL Accession /GB=C07979 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk172g10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_181903(11), NM_066787(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_181903 NCBI Caenorhabditis elegans K11H3.1b (K11H3.1) mRNA, complete cds. 11/11 A 
NM_066787 NCBI Caenorhabditis elegans K11H3.1a (K11H3.1) mRNA, complete cds. 11/11 A 
GENEFINDER00000008467 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9854198:9860012:-1 11/11 None
K11H3.1b.1 ENSEMBL cdna:known chromosome:CEL140:III:9853713:9858398:-1 gene:K11H3.1 11/11 A 
K11H3.1b.2 ENSEMBL cdna:known chromosome:CEL140:III:9853988:9858398:-1 gene:K11H3.1 11/11 A 
K11H3.1a ENSEMBL cdna:known chromosome:CEL140:III:9854198:9859076:-1 gene:K11H3.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000008462 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9854042-9854868(-) 98.33 98.33
Public Domain and Genome References
Ensembl K11H3.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD54146 Hypothetical protein K11H3.1b [Caenorhabditis elegans] ref|NP_871632.1| K11H3.1b [Caenorhabditis elegans] sp|P34517|GPDA_CAEEL Probable glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic 0.0
blast CAA80176 Hypothetical protein K11H3.1a [Caenorhabditis elegans] ref|NP_499188.2| K11H3.1a [Caenorhabditis elegans] 0.0
blast CAE65098 Hypothetical protein CBG09958 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006168 EMBL-EBI NAD-dependent glycerol-3-phosphate dehydrogenase 1.0E-126
Pfam IPR006168 EMBL-EBI NAD-dependent glycerol-3-phosphate dehydrogenase 1.0E-126
Pfam IPR006168 EMBL-EBI NAD-dependent glycerol-3-phosphate dehydrogenase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:173263_S_AT
gaggaggtttatttgatgatgcacaagactggattggatgctaaattcccattgttcaca
gccgttcacaaaatctgcgccggtgagatgaagcctgccgaactcgtcgattgtctcaga
aaccatccagaacacatgta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGAGGTTTATTTGATGATGCACA 181 403 16 Antisense
GATGCACAAGACTGGATTGGATGCT 436 413 33 Antisense
CCATTGTTCACAGCCGTTCACAAAA 220 271 64 Antisense
ACAGCCGTTCACAAAATCTGCGCCG 266 109 73 Antisense
CCGTTCACAAAATCTGCGCCGGTGA 261 263 77 Antisense
ATCTGCGCCGGTGAGATGAAGCCTG 497 33 88 Antisense
TGCCGAACTCGTCGATTGTCTCAGA 119 585 111 Antisense
GAACTCGTCGATTGTCTCAGAAACC 26 349 115 Antisense
GTCGATTGTCTCAGAAACCATCCAG 91 473 121 Antisense
TTGTCTCAGAAACCATCCAGAACAC 33 707 126 Antisense
TCAGAAACCATCCAGAACACATGTA 522 623 131 Antisense
Sequence Source Affymetrix Proprietary Database