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[173259_at]

Description CEK003A7R_rc /REP_DB=TREMBL Accession /GB=D34033 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk3a7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 36      6grp_high1_10_10 > 64      4grp_highest_8_8 > 16      4grp_high_8_8 > 52      6grp_highest_nonorm > 67      6grp_total > 53      4grp_total > 59      6grp_highest_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1117
1 2 3 4 range
A 1679.3
(1.2)
P 		2003.2
(3)
P 		1791.7
(1.8)
P 		902.2
(-3)
P 		1101
B 1585.2
(0.6)
P 		1877.6
(2.2)
P 		2019.1
(3)
P 		938.1
(-3)
P 		1081
C 1722.5
(1.4)
P 		2005.6
(3)
P 		1807
(1.9)
P 		958.8
(-3)
P 		1047
avr 1662.3
(1.3) 		1962.1
(3) 		1872.6
(2.5) 		933
(-3) 		1029

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 738
1 2 3 4 5 6 range
A 1636.9
(-3)
P 		1882.8
(2.4)
P 		1910.9
(3)
P 		1702.7
(-1.6)
P 		1703.4
(-1.5)
P 		1877.2
(2.3)
P 		274
B 1926.4
(-0.7)
P 		1763.9
(-2)
P 		2375.3
(3)
P 		2056.5
(0.4)
P 		1647.2
(-3)
P 		1821.2
(-1.6)
P 		728
C 1810.8
(-0.9)
P 		1655.6
(-3)
P 		2094.6
(3)
P 		1705.3
(-2.3)
P 		1731.4
(-2)
P 		1727
(-2)
P 		439
avr 1791.4
(-1.7) 		1767.4
(-2) 		2126.9
(3) 		1821.5
(-1.2) 		1694
(-3) 		1808.5
(-1.4) 		433
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 498
1 2 3 4 range
A 611.4
(3)
P 		434.8
(0.8)
P 		468.4
(1.2)
P 		132.1
(-3)
P 		479
B 505.5
(3)
P 		463.7
(2.2)
P 		467.9
(2.3)
P 		199.9
(-3)
P 		306
C 570.2
(2.2)
P 		576.6
(2.3)
P 		629.8
(3)
P 		161.7
(-3)
P 		468
avr 562.4
(3) 		491.7
(1.9) 		522
(2.4) 		164.6
(-3) 		398

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 377
1 2 3 4 5 6 range
A 301.8
(-3)
P 		669.6
(3)
P 		416.2
(-1.1)
P 		431.9
(-0.9)
P 		514
(0.5)
P 		457
(-0.5)
P 		368
B 670.3
(2.6)
P 		587.1
(-1.1)
P 		576.8
(-1.6)
P 		544.7
(-3)
P 		669.2
(2.6)
P 		679.1
(3)
P 		134
C 671.2
(3)
P 		505.2
(-0)
P 		533.1
(0.5)
P 		342.9
(-3)
P 		560.3
(1)
P 		578.1
(1.3)
P 		328
avr 547.8
(1.4) 		587.3
(3) 		508.7
(-0.2) 		439.8
(-3) 		581.2
(2.8) 		571.4
(2.4) 		148
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173259_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27644
Sequence Type Exemplar sequence
Representative Public ID CEK003A7R NCBI
Target Description CEK003A7R_rc /REP_DB=TREMBL Accession /GB=D34033 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk3a7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026575(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026575 NCBI Caenorhabditis elegans Y37E3.17b (Y37E3.17) mRNA, complete cds. 11/11 None
Y37E3.17b ENSEMBL cdna:known chromosome:CEL140:I:2128592:2145974:1 gene:Y37E3.17 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001026574 8/11 Cross Hyb Matching Probes None
SNAP00000001200 8/11 Cross Hyb Matching Probes None
GENEFINDER00000001207 8/11 Cross Hyb Matching Probes None
Y37E3.17a 8/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
171775 2 1 NM_001026575 173259_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2144879-2145909(+) 85.15 85.15
Public Domain and Genome References
Ensembl Y37E3.17
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001021746 Y37E3.17b [Caenorhabditis elegans] gb|AAT81177.1| Hypothetical protein Y37E3.17b [Caenorhabditis elegans] 0.0
blast NP_001021745 Y37E3.17a [Caenorhabditis elegans] gb|AAK27867.2| Hypothetical protein Y37E3.17a [Caenorhabditis elegans] 0.0
blast CAE74368 Hypothetical protein CBG22093 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006222 EMBL-EBI Glycine cleavage T protein (aminomethyl transferase) 2.6E-38
Sequence
Target Sequence 
>C. ELEGANS:173259_AT
ggaagagggatgtgtgttggatgatagatatgttccaagcggaaatgaagttattccgaa
tcgatggnnnnngaagcgagagtcggccagatcacatccggagcctacaatgtccgcctt
cagaagcctattgcattcgcgtggattgacaacgccgttggaaagaacgaacggctcgtc
gttgacattggagacaaacgacttttcgccaccagtctggagaccccaacgatcccacca
attcaataaaccctcgtcccctttggcactnaannnnnnaaattctaaatcccctctgat
tttcccattttatttatttgttgtttccctccttgccccgaccccttcgtattcattttt
atg

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAAGAGGGATGTGTGTTGGATGAT 167 531 49 Antisense
GAAGCGAGAGTCGGCCAGATCACAT 652 343 121 Antisense
CACATCCGGAGCCTACAATGTCCGC 512 195 141 Antisense
CAATGTCCGCCTTCAGAAGCCTATT 220 183 156 Antisense
GAAGCCTATTGCATTCGCGTGGATT 235 345 171 Antisense
CGCGTGGATTGACAACGCCGTTGGA 431 251 186 Antisense
AGAACGAACGGCTCGTCGTTGACAT 561 67 212 Antisense
ACGGCTCGTCGTTGACATTGGAGAC 314 95 219 Antisense
GATCCCACCAATTCAATAAACCCTC 126 417 279 Antisense
CCTCTGATTTTCCCATTTTATTTAT 701 267 341 Antisense
CGACCCCTTCGTATTCATTTTTATG 90 1 387 Antisense
Sequence Source Affymetrix Proprietary Database