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[173257_s_at]

Description g4204794 /REP_DB=GenBank Identifier /FEA=mRNA Transcript /DEF=dauer-upregulated gene
Cluster 6grp_highest_10_10 > 50      6grp_high1_10_10 > 16      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 05      6grp_total > 05      4grp_total > 12      6grp_highest_sub > De      6grp_high1_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23931
1 2 3 4 range
A 11405.3
(-1)
P 		5759.6
(-2.5)
P 		3931.1
(-3)
P 		26913
(3)
P 		22982
B 11275.1
(-0.3)
P 		4814.9
(-2.4)
P 		2981.7
(-3)
P 		21754.9
(3)
P 		18773
C 10168.6
(-1.1)
P 		4503.4
(-2.6)
P 		3117.3
(-3)
P 		25684.8
(3)
P 		22568
avr 10949.7
(-0.9) 		5026
(-2.5) 		3343.4
(-3) 		24784.2
(3) 		21441

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2787
1 2 3 4 5 6 range
A 8122.8
(3)
P 		6560.5
(-0.4)
P 		5908.1
(-1.8)
P 		6363.6
(-0.8)
P 		5347.1
(-3)
P 		5525.6
(-2.6)
P 		2776
B 7408.5
(3)
P 		6879.4
(1.5)
P 		5909.2
(-1.3)
P 		5336.1
(-3)
P 		5980.4
(-1.1)
P 		5417.1
(-2.8)
P 		2072
C 7288.5
(3)
P 		7143.7
(2.5)
P 		5519.4
(-2.5)
P 		6945.7
(1.9)
P 		5360.5
(-3)
P 		5461.3
(-2.7)
P 		1928
avr 7606.6
(3) 		6861.2
(0.9) 		5778.9
(-2.1) 		6215.1
(-0.9) 		5562.7
(-2.7) 		5468
(-3) 		2139
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3945
1 2 3 4 range
A 4152.7
(3)
P 		1250.3
(-2.6)
P 		1027.7
(-3)
P 		3939.5
(2.6)
P 		3125
B 3595.5
(1.4)
P 		1189.2
(-2.2)
P 		690.9
(-3)
P 		4636
(3)
P 		3945
C 3366.1
(1.2)
P 		1294.7
(-2.6)
P 		1086.5
(-3)
P 		4330.9
(3)
P 		3244
avr 3704.8
(1.9) 		1244.7
(-2.4) 		935
(-3) 		4302.1
(3) 		3367

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1415
1 2 3 4 5 6 range
A 1497.4
(-1.8)
P 		2333.2
(3)
P 		1286.7
(-3)
P 		1614
(-1.1)
P 		1613.5
(-1.1)
P 		1345.3
(-2.7)
P 		1047
B 2577.8
(3)
P 		2289.9
(1.5)
P 		1434.9
(-2.9)
P 		1413.3
(-3)
P 		2429.8
(2.2)
P 		2020
(0.1)
P 		1165
C 2701.5
(3)
P 		2179.7
(0.6)
P 		1404.8
(-3)
P 		1396.8
(-3)
P 		1734.6
(-1.4)
P 		1828.2
(-1)
P 		1305
avr 2258.9
(2.9) 		2267.6
(3) 		1375.5
(-3) 		1474.7
(-2.3) 		1926
(0.7) 		1731.2
(-0.6) 		892
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173257_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26257
Sequence Type Exemplar sequence
Representative Public ID 4204794 NCBI
Target Description g4204794 /REP_DB=GenBank Identifier /FEA=mRNA Transcript /DEF=dauer-upregulated gene
Cluster Evidence This cluster is supported by a mRNA.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a GenBank identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) U52070(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
U52070 NCBI Caenorhabditis elegans dauer-upregulated mRNA, complete cds. 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_062259 2/11 Cross Hyb Matching Probes None
F54D10.2 2/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:15042712-15043872(-) 70.39 70.39
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD11527 dauer-upregulated gene [Caenorhabditis elegans] 7.0E-31
Sequence
Target Sequence 
>C. ELEGANS:173257_S_AT
tggaattggccttgactcgagcataattctatctctgcttcgaggacggaccacttctaa
aaggggtggggatgggacgtcattttgcaccatcatttgttcttttctctcgagaaggtg
tgagtaactcagagcaaataacatcatcgttgagacaagcatctttcagggtagatgtga
agtggtccttgatctcttctcattctagtgtcatgtgtcttgccgtcgcgcgtctatggg
cgcctgacgacgagagacacgaggcacgagagcatatggcggcacaccctcacgagtaga
agattcttcagtcgagaaagaccttgcatcgtggcgccggacgaaagtaagactctcgtc
gtctggca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGAATTGGCCTTGACTCGAGCATA 583 545 601 Antisense
GACTCGAGCATAATTCTATCTCTGC 278 375 614 Antisense
CTATCTCTGCTTCGAGGACGGACCA 109 225 629 Antisense
TGGGACGTCATTTTGCACCATCATT 199 555 673 Antisense
CATCATTTGTTCTTTTCTCTCGAGA 291 213 691 Antisense
CTTGATCTCTTCTCATTCTAGTGTC 226 219 788 Antisense
ATTCTAGTGTCATGTGTCTTGCCGT 204 11 802 Antisense
CGTCTATGGGCGCCTGACGACGAGA 690 245 831 Antisense
GACGACGAGAGACACGAGGCACGAG 409 379 846 Antisense
CGGCACACCCTCACGAGTAGAAGAT 129 241 880 Antisense
AAAGTAAGACTCTCGTCGTCTGGCA 380 119 944 Antisense
Sequence Source GenBank