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[173256_at]

Description g4204794 /REP_DB=GenBank Identifier /FEA=mRNA Transcript /DEF=dauer-upregulated gene
Cluster 6grp_total > 81      4grp_total > 42      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 8.6
(-3)
A 		45.7
(3)
A 		36
(1.4)
A 		39.3
(2)
A 		37
B 15.1
(-3)
A 		37.5
(2.5)
A 		39.7
(3)
A 		22.6
(-1.2)
A 		25
C 22.9
(3)
A 		21.4
(2.6)
A 		3.7
(-2.4)
A 		1.5
(-3)
A 		21
avr 15.5
(-3) 		34.9
(3) 		26.5
(0.4) 		21.1
(-1.3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 46.4
(3)
A 		29.7
(0.5)
A 		24
(-0.3)
A 		32.1
(0.9)
A 		43.9
(2.6)
A 		6.1
(-3)
A 		40
B 19.7
(1.1)
A 		27.4
(3)
A 		20.4
(1.3)
A 		24.9
(2.4)
A 		13.1
(-0.5)
A 		3.2
(-3)
A 		24
C 5.2
(-3)
A 		40.7
(0.8)
A 		22.6
(-1.2)
A 		62
(3)
A 		24.4
(-1)
A 		36.4
(0.3)
A 		57
avr 23.8
(-0.9) 		32.6
(1.3) 		22.3
(-1.3) 		39.7
(3) 		27.1
(-0.1) 		15.2
(-3) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 3.1
(-3)
A 		9.9
(3)
A 		9.4
(2.6)
A 		5.8
(-0.6)
A 		7
B 4.8
(-3)
A 		9.3
(3)
A 		9.2
(2.9)
A 		4.8
(-3)
A 		5
C 7.6
(3)
A 		6.2
(1.8)
A 		1.3
(-2.2)
A 		0.3
(-3)
A 		7
avr 5.2
(-1) 		8.5
(3) 		6.6
(0.7) 		3.6
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 8.5
(0.6)
A 		10.6
(1.6)
A 		5.2
(-1.1)
A 		8.1
(0.4)
A 		13.3
(3)
A 		1.5
(-3)
A 		12
B 6.9
(1.3)
A 		9.1
(3)
A 		5
(-0.1)
A 		6.6
(1.1)
A 		5.3
(0.1)
A 		1.2
(-3)
A 		8
C 1.9
(-3)
A 		12.4
(2.9)
A 		5.8
(-0.8)
A 		12.5
(3)
A 		7.9
(0.4)
A 		12.2
(2.8)
A 		11
avr 5.8
(-2.2) 		10.7
(3) 		5.3
(-2.7) 		9.1
(1.3) 		8.8
(1) 		5
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173256_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26257
Sequence Type Exemplar sequence
Representative Public ID 4204794 NCBI
Target Description g4204794 /REP_DB=GenBank Identifier /FEA=mRNA Transcript /DEF=dauer-upregulated gene
Cluster Evidence This cluster is supported by a mRNA.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a GenBank identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) U52070(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
U52070 NCBI Caenorhabditis elegans dauer-upregulated mRNA, complete cds. 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:15042712-15043872(-) 70.39 70.39
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD11527 dauer-upregulated gene [Caenorhabditis elegans] 7.0E-31
Sequence
Target Sequence 
>C. ELEGANS:173256_AT
agtagtctatgatcagtttcaacgacagggcaaggcagagagcactattgaccatatatg
cgcacgaatacgcaatatttgaaaatgagcgaggacagtcggtcagcgaacaatttcgtt
gatgtattgacattaggtatttgttcttttattgtatttggccgatgagatattagcttg
gcatagtttttttcgcttgattgttattctcttttggaattggccttgactcgagcataa
ttctatctctgcttcgaggacggaccacttctaaaaggggtggggatgggacgtcatttt
gcaccatcatttgttcttttctctcgagaaggtgtgagtaactcagagcaaataacatca
tcgttgagacaagcatctttcagggtagatgtgaagtggtccttgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTAGTCTATGATCAGTTTCAACGA 1 63 387 Antisense
GTTTCAACGACAGGGCAAGGCAGAG 254 429 402 Antisense
AAGGCAGAGAGCACTATTGACCATA 269 161 418 Antisense
ATTGACCATATATGCGCACGAATAC 513 5 433 Antisense
GAGCGAGGACAGTCGGTCAGCGAAC 271 387 473 Antisense
GTTCTTTTATTGTATTTGGCCGATG 395 443 529 Antisense
GGCCGATGAGATATTAGCTTGGCAT 262 543 546 Antisense
GCTTGGCATAGTTTTTTTCGCTTGA 189 307 562 Antisense
TTTCGCTTGATTGTTATTCTCTTTT 375 671 577 Antisense
GTTGAGACAAGCATCTTTCAGGGTA 290 437 749 Antisense
GGGTAGATGTGAAGTGGTCCTTGAT 707 495 769 Antisense
Sequence Source GenBank