[Home] | [Total List]

[173253_s_at]

Description C67150 /REP_DB=TREMBL Accession /GB=C67150 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk261a6 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 24      6grp_high1_10_10 > 30      4grp_highest_8_8 > 21      4grp_high_8_8 > 15      6grp_highest_nonorm > 09      6grp_total > 42      4grp_total > 08      6grp_cgc > 81      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18788
1 2 3 4 range
A 27150
(-3)
P 		30490.7
(-1.4)
P 		33265.3
(-0)
P 		39457.7
(3)
P 		12308
B 27593.5
(-3)
P 		28587.6
(-2.3)
P 		34316.3
(1.5)
P 		36646.9
(3)
P 		9053
C 26176.2
(-2.5)
P 		24673.1
(-3)
P 		26951.4
(-2.3)
P 		43461.5
(3)
P 		18788
avr 26973.2
(-3) 		27917.1
(-2.6) 		31511
(-0.9) 		39855.4
(3) 		12882

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9189
1 2 3 4 5 6 range
A 23472.2
(-0.9)
P 		23820.1
(-0.6)
P 		29036.4
(3)
P 		25082.2
(0.3)
P 		20395.4
(-3)
P 		22420.7
(-1.6)
P 		8641
B 23062.6
(0.1)
P 		25262.2
(2.3)
P 		25995.4
(3)
P 		22140
(-0.8)
P 		20677.7
(-2.2)
P 		19847.7
(-3)
P 		6148
C 22851.3
(-0.8)
P 		24197.5
(1.8)
P 		24854.8
(3)
P 		22473.4
(-1.5)
P 		22824.1
(-0.8)
P 		21659.9
(-3)
P 		3195
avr 23128.7
(-0.9) 		24426.6
(0.5) 		26628.9
(3) 		23231.9
(-0.8) 		21299.1
(-3) 		21309.4
(-3) 		5330
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4110
1 2 3 4 range
A 9885.3
(3)
P 		6618.7
(-1.8)
P 		8696.2
(1.3)
P 		5775.8
(-3)
P 		4110
B 8799.4
(3)
P 		7060.5
(-3)
P 		7951.9
(0.1)
P 		7809.5
(-0.4)
P 		1739
C 8665
(1.1)
P 		7093.7
(-3)
P 		9393.4
(3)
P 		7328.3
(-2.4)
P 		2300
avr 9116.6
(3) 		6924.3
(-3) 		8680.5
(1.8) 		6971.2
(-2.9) 		2192

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4145
1 2 3 4 5 6 range
A 4326.9
(-3)
P 		8471.6
(3)
P 		6323.5
(-0.1)
P 		6361.4
(-0.1)
P 		6154.4
(-0.4)
P 		5458.7
(-1.4)
P 		4145
B 8024.6
(2.1)
P 		8408.7
(3)
P 		6312.5
(-1.9)
P 		5864.1
(-3)
P 		8401.1
(3)
P 		7401.1
(0.6)
P 		2545
C 8470
(3)
P 		7383.4
(1.3)
P 		6326
(-0.3)
P 		4519.4
(-3)
P 		7385.5
(1.4)
P 		7250.8
(1.1)
P 		3951
avr 6940.5
(0.3) 		8087.9
(3) 		6320.7
(-1.2) 		5581.6
(-3) 		7313.7
(1.1) 		6703.5
(-0.3) 		2506
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173253_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27891
Sequence Type Exemplar sequence
Representative Public ID C67150 NCBI
Target Description C67150 /REP_DB=TREMBL Accession /GB=C67150 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk261a6 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062531(11), NM_062532(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062531 NCBI Caenorhabditis elegans Ribosomal Protein, Large subunit family member (rpl-22) (rpl-22) mRNA, complete cds. 11/11 A 
NM_062532 NCBI Caenorhabditis elegans Ribosomal Protein, Large subunit family member (rpl-22) (rpl-22) mRNA, complete cds. 11/11 None
SNAP00000044048 ENSEMBL cdna:SNAP chromosome:CEL140:II:5055606:5056162:1 11/11 None
GENEFINDER00000044059 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5055606:5056162:1 11/11 None
C27A2.2a.2 ENSEMBL cdna:known chromosome:CEL140:II:5055523:5056205:1 gene:C27A2.2 11/11 None
C27A2.2b ENSEMBL cdna:known chromosome:CEL140:II:5055600:5056174:1 gene:C27A2.2 11/11 A 
C27A2.2a.1 ENSEMBL cdna:known chromosome:CEL140:II:5055600:5056205:1 gene:C27A2.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5055844-5056196(+) 80.95 80.95
Public Domain and Genome References
Ensembl C27A2.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494932 Ribosomal Protein, Large subunit family member (rpl-22) [Caenorhabditis elegans] gb|AAK31460.1| Ribosomal protein, large subunit protein 22, isoform a [Caenorhabditis elegans] sp|P52819|RL22_CAEEL 60S ribosomal protein L22 2.0E-36
blast CAE59029 Hypothetical protein CBG02309 [Caenorhabditis briggsae] 6.0E-35
Protein Domains
Database ID Description E-Value
Pfam IPR002671 EMBL-EBI Ribosomal L22e protein 3.4E-83
Pfam IPR002671 EMBL-EBI Ribosomal L22e protein 9.3E-14
Sequence
Target Sequence 
>C. ELEGANS:173253_S_AT
gaaagaccggacatttggccgctaacaacgtcaaggtcgaggtcgccaagtccaaggtct
cagtcgtctccgaggtcccattctcgaagagatacctcaagtaccttaccaagaagtacc
tcaagagaaactccctccgtgattggctccgtgtggtcgctgtcaacaagaacacctacg
aggtcagatacttccacatcaacgacggagaggacgcaggaagcgaccacgagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAGACCGGACATTTGGCCGCTAA 661 351 108 Antisense
TGGCCGCTAACAACGTCAAGGTCGA 226 545 123 Antisense
ACGTCAAGGTCGAGGTCGCCAAGTC 11 87 135 Antisense
TCTCCGAGGTCCCATTCTCGAAGAG 311 611 174 Antisense
GAGATACCTCAAGTACCTTACCAAG 54 395 196 Antisense
CAAGAGAAACTCCCTCCGTGATTGG 349 185 229 Antisense
TCCGTGTGGTCGCTGTCAACAAGAA 406 591 255 Antisense
GTCGCTGTCAACAAGAACACCTACG 688 471 263 Antisense
CACCTACGAGGTCAGATACTTCCAC 156 197 280 Antisense
GATACTTCCACATCAACGACGGAGA 260 423 294 Antisense
GAGGACGCAGGAAGCGACCACGAGT 50 405 317 Antisense
Sequence Source Affymetrix Proprietary Database