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[173252_s_at]

Description C68597 /REP_DB=TREMBL Accession /GB=C68597 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk305h7 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 09      6grp_high1_10_10 > 90      4grp_highest_8_8 > 09      4grp_high_8_8 > 54      6grp_highest_nonorm > 56      6grp_total > 92      4grp_total > 58      6grp_cgc > 97      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1912
1 2 3 4 range
A 1091.9
(-0.7)
P 		1967.4
(2.6)
P 		2065.2
(3)
P 		465.9
(-3)
P 		1599
B 995.6
(-0.8)
P 		2048.9
(2.6)
P 		2172
(3)
P 		313.4
(-3)
P 		1859
C 744.9
(-1.7)
P 		2087.5
(2.6)
P 		2225.7
(3)
P 		346.9
(-3)
P 		1879
avr 944.1
(-1.1) 		2034.6
(2.6) 		2154.3
(3) 		375.4
(-3) 		1779

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1386
1 2 3 4 5 6 range
A 1649.4
(-1.5)
P 		2309.4
(2.1)
P 		1996.3
(0.4)
P 		2466.4
(3)
P 		2248.7
(1.8)
P 		1381.1
(-3)
P 		1085
B 1695.5
(-2.5)
P 		2437.6
(1.3)
P 		1587.6
(-3)
P 		2108.5
(-0.4)
P 		2767.4
(3)
P 		1721.6
(-2.3)
P 		1180
C 1978.7
(-0.4)
P 		2641.1
(2.9)
P 		1512.5
(-2.7)
P 		2217.1
(0.8)
P 		2653.2
(3)
P 		1447.2
(-3)
P 		1206
avr 1774.5
(-1.5) 		2462.7
(2.5) 		1698.8
(-1.9) 		2264
(1.3) 		2556.4
(3) 		1516.6
(-3) 		1040
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 717
1 2 3 4 range
A 397.5
(1.2)
P 		427.1
(1.6)
P 		539.9
(3)
P 		68.2
(-3)
P 		472
B 317.5
(0.4)
P 		506
(3)
P 		503.3
(3)
P 		66.8
(-3)
P 		439
C 246.6
(-1.4)
P 		600.2
(1.5)
P 		775.7
(3)
P 		58.5
(-3)
P 		717
avr 320.5
(-0.2) 		511.1
(1.9) 		606.3
(3) 		64.5
(-3) 		542

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 820
1 2 3 4 5 6 range
A 304
(-3)
P 		821.3
(3)
P 		434.7
(-1.5)
P 		625.5
(0.7)
P 		678.6
(1.3)
P 		336.3
(-2.6)
P 		517
B 589.9
(-1.3)
P 		811.4
(0.5)
P 		385.5
(-3)
P 		558.5
(-1.6)
P 		1124.4
(3)
P 		642
(-0.9)
P 		739
C 733.4
(1.4)
P 		805.9
(2.3)
P 		385
(-3)
P 		445.9
(-2.2)
P 		858.5
(3)
P 		484.4
(-1.7)
P 		474
avr 542.4
(-1.3) 		812.9
(2.1) 		401.7
(-3) 		543.3
(-1.3) 		887.2
(3) 		487.6
(-1.9) 		486
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173252_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28031
Sequence Type Exemplar sequence
Representative Public ID C68597 NCBI
Target Description C68597 /REP_DB=TREMBL Accession /GB=C68597 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk305h7 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073433(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073433 NCBI Caenorhabditis elegans Neuropeptide-Like Protein family member (nlp-33) (nlp-33) mRNA, complete cds. 11/11 None
SNAP00000015934 ENSEMBL cdna:SNAP chromosome:CEL140:V:11149945:11150217:1 9/11 None
GENEFINDER00000015946 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11149945:11150217:1 9/11 None
T19C4.7 ENSEMBL cdna:known chromosome:CEL140:V:11149934:11150326:1 gene:T19C4.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11149954-11150314(+) 65.97 81.41
Public Domain and Genome References
Gene Title
Gene Symbol nlp-33
Ensembl T19C4.7
Entrez Gene 179545 Entrez gene
SwissProt Q95ZN4 EMBL-EBI
WormBase CE27777 Wormbase
Functional Annotations
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505834.1 1 7-26
T19C4.7 1 7-26
SNAP00000015934 1 7-26
GENEFINDER00000015946 1 7-26
Sequence
Target Sequence 
>C. ELEGANS:173252_S_AT
gtgcttctctttgccatattggctatcgttgatgcccagtggggnatatggtggtccata
tggtggatatggcggtggatacggtggtggaccatggggatannnnnnnnnnnnnnnnnn
nnnnnactggggaggatatggtggaggaccatggggaggatatggaggtggaccatgggg
aggatactacggaaagtaaatgcaatgatacctcaacgatcttctgct

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGCTTCTCTTTGCCATATTGGCTA 560 479 72 Antisense
TTGCCATATTGGCTATCGTTGATGC 426 701 82 Antisense
TATTGGCTATCGTTGATGCCCAGTG 205 665 88 Antisense
TGGCTATCGTTGATGCCCAGTGGGG 64 545 91 Antisense
GGATACGGTGGTGGACCATGGGGAT 433 511 148 Antisense
GGTGGAGGACCATGGGGAGGATATG 285 497 211 Antisense
GGAGGTGGACCATGGGGAGGATACT 50 517 235 Antisense
GTGGACCATGGGGAGGATACTACGG 148 481 239 Antisense
CCATGGGGAGGATACTACGGAAAGT 294 271 244 Antisense
GTAAATGCAATGATACCTCAACGAT 233 461 267 Antisense
AATGATACCTCAACGATCTTCTGCT 609 163 275 Antisense
Sequence Source Affymetrix Proprietary Database