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[173249_s_at] Ribosomal protein L21

Description C69025 /REP_DB=TREMBL Accession /GB=C69025 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk299e10 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 26      6grp_high1_10_10 > 51      4grp_highest_8_8 > 06      4grp_high_8_8 > 30      6grp_highest_nonorm > 09      6grp_total > 51      4grp_total > 25      6grp_highest_sub > 03      6grp_cgc > 93      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19691
1 2 3 4 range
A 30127.9
(-3)
P 		44128.8
(1.4)
P 		39313.7
(-0.1)
P 		49433.9
(3)
P 		19306
B 32396
(-3)
P 		37661.6
(0.6)
P 		40327
(2.4)
P 		41227.8
(3)
P 		8832
C 29743.3
(-3)
P 		34494.6
(-1.3)
P 		31223.6
(-2.5)
P 		46286.2
(3)
P 		16543
avr 30755.7
(-3) 		38761.7
(0.2) 		36954.8
(-0.5) 		45649.3
(3) 		14894

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10091
1 2 3 4 5 6 range
A 27945.4
(-0.1)
P 		27843.6
(-0.2)
P 		31014.6
(2.8)
P 		31191.7
(3)
P 		24976.6
(-3)
P 		30127.6
(2)
P 		6215
B 25722.7
(-0.5)
P 		26026.8
(-0.4)
P 		31518.2
(3)
P 		28474.9
(1.1)
P 		22635.1
(-2.4)
P 		21716.4
(-3)
P 		9802
C 25243.9
(-2.8)
P 		27308.5
(-1)
P 		31807.7
(3)
P 		30392.9
(1.8)
P 		27611.6
(-0.7)
P 		24998.2
(-3)
P 		6810
avr 26304
(-1.8) 		27059.6
(-1.1) 		31446.8
(3) 		30019.8
(1.7) 		25074.4
(-3) 		25614.1
(-2.5) 		6372
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3733
1 2 3 4 range
A 10969.6
(3)
P 		9579.2
(0.8)
P 		10277.4
(1.9)
P 		7236.2
(-3)
P 		3733
B 10330.8
(3)
P 		9301.6
(-1)
P 		9344.7
(-0.8)
P 		8785.7
(-3)
P 		1545
C 9845.9
(1)
P 		9917.4
(1.1)
P 		10882.4
(3)
P 		7804.6
(-3)
P 		3078
avr 10382.1
(3) 		9599.4
(1.1) 		10168.2
(2.5) 		7942.2
(-3) 		2440

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4751
1 2 3 4 5 6 range
A 5151.5
(-3)
P 		9902.6
(3)
P 		6754.3
(-1)
P 		7911
(0.5)
P 		7536.8
(0)
P 		7335.1
(-0.2)
P 		4751
B 8950.2
(2.1)
P 		8663.2
(1.1)
P 		7653.6
(-2.6)
P 		7542
(-3)
P 		9196.3
(3)
P 		8097.9
(-1)
P 		1654
C 9356.8
(3)
P 		8332.6
(1.1)
P 		8095.6
(0.7)
P 		6112
(-3)
P 		8934.7
(2.2)
P 		8368.3
(1.2)
P 		3245
avr 7819.5
(-0.9) 		8966.1
(3) 		7501.2
(-1.9) 		7188.3
(-3) 		8555.9
(1.6) 		7933.8
(-0.5) 		1778
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173249_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28002
Sequence Type Exemplar sequence
Representative Public ID C69025 NCBI
Target Description C69025 /REP_DB=TREMBL Accession /GB=C69025 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk299e10 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066373(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066373 NCBI Caenorhabditis elegans Ribosomal Protein, Large subunit family member (rpl-21) (rpl-21) mRNA, complete cds. 11/11 A 
SNAP00000018770 ENSEMBL cdna:SNAP chromosome:CEL140:III:8129512:8130140:-1 11/11 None
GENEFINDER00000018777 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8129512:8130140:-1 11/11 None
C14B9.7.1 ENSEMBL cdna:known chromosome:CEL140:III:8129442:8130148:-1 gene:C14B9.7 11/11 A 
C14B9.7.2 ENSEMBL cdna:known chromosome:CEL140:III:8129469:8130496:-1 gene:C14B9.7 11/11 A 
C14B9.7.3 ENSEMBL cdna:known chromosome:CEL140:III:8129471:8130154:-1 gene:C14B9.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8129492-8129996(-) 91.95 91.95
Public Domain and Genome References
Gene Title Ribosomal protein L21
Gene Symbol rpl-21
Ensembl C14B9.7
Entrez Gene 176146 Entrez gene
SwissProt P34334 EMBL-EBI
WormBase CE00078 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:264679_S_AT 60S ribosomal protein L21 (RPL21A) at
ATGENOME1:16531_S_AT 60S ribosomal protein L21 (RPL21A) at
CANINE:1583136_AT similar to ribosomal protein L21 cfa
CANINE:1583135_S_AT similar to ribosomal protein L21 cfa
CANINE_2:CFAAFFX.17922.1.S1_AT similar to ribosomal protein L21 cfa
CANINE_2:CFAAFFX.18392.1.S1_X_AT similar to ribosomal protein L21 cfa
CANINE_2:CFAAFFX.21705.1.S1_AT similar to ribosomal protein L21 cfa
CANINE_2:CFAAFFX.21705.1.S1_X_AT similar to ribosomal protein L21 cfa
CANINE_2:CFAAFFX.379.1.S1_X_AT similar to ribosomal protein L21 cfa
CANINE_2:CFAAFFX.544.1.S1_X_AT similar to ribosomal protein L21 cfa
CANINE_2:CFAAFFX.802.1.S1_AT similar to ribosomal protein L21 cfa
MOUSE430_2:1459002_AT similar to ribosomal protein L21 mm
MOE430B:1459002_AT similar to ribosomal protein L21 mm
MU11KSUBA:U93863_S_AT similar to ribosomal protein L21 mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA27951 Ribosomal protein, large subunit protein 21 [Caenorhabditis elegans] ref|NP_498774.1| Ribosomal Protein, Large subunit family member (rpl-21) [Caenorhabditis elegans] sp|P34334|RL21_CAEEL 60S ribosomal protein L21 6.0E-89
blast CAE70207 Hypothetical protein CBG16683 [Caenorhabditis briggsae] 7.0E-87
Protein Domains
Database ID Description E-Value
Pfam IPR001147 EMBL-EBI Ribosomal protein L21e 3.4E-69
Sequence
Target Sequence 
>C. ELEGANS:173249_S_AT
cttcaacgtcaccagaggagccgtcggaatcatcgtcaacaagagagtccgcgggaaaca
ttcttccaaagagaatcaacatccgtatcgagcacatcaagccatccaagtgcagaaccg
acttcttgaaccgtgtcaagtccaatgacgagaagagaaaggccgctaagtcagctggac
aaccagtcccagctttgaagagacttccagtcgcccctagaggagctcacaccgtcacca
cccagaacaatgagccagaacttcccgccccactccgtttcgagattgttgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTCAACGTCACCAGAGGAGCCGTC 685 217 62 Antisense
GAGGAGCCGTCGGAATCATCGTCAA 199 405 76 Antisense
TCATCGTCAACAAGAGAGTCCGCGG 578 621 91 Antisense
GAGAATCAACATCCGTATCGAGCAC 396 391 132 Antisense
GTATCGAGCACATCAAGCCATCCAA 444 455 146 Antisense
AAGCCATCCAAGTGCAGAACCGACT 275 149 160 Antisense
AGAACCGACTTCTTGAACCGTGTCA 516 73 175 Antisense
AGGCCGCTAAGTCAGCTGGACAACC 144 49 221 Antisense
CTGGACAACCAGTCCCAGCTTTGAA 655 239 236 Antisense
CTTTGAAGAGACTTCCAGTCGCCCC 61 223 254 Antisense
CCCCACTCCGTTTCGAGATTGTTGC 679 259 329 Antisense
Sequence Source Affymetrix Proprietary Database