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[173248_s_at] 60S ribosomal protein L32

Description CEC0335 /REP_DB=TREMBL Accession /GB=C13033 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk163a3 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 45      6grp_high1_10_10 > 54      4grp_highest_8_8 > 06      4grp_high_8_8 > 22      6grp_highest_nonorm > 09      6grp_total > 40      4grp_total > 17      6grp_cgc > 92      6grp_cgc_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15996
1 2 3 4 range
A 27853.6
(-3)
P 		33905.1
(-0.5)
P 		35396.6
(0.1)
P 		42467.1
(3)
P 		14614
B 28597.3
(-3)
P 		31073.9
(-0.6)
P 		32221.2
(0.5)
P 		34813.8
(3)
P 		6217
C 26617
(-2.9)
P 		29322.3
(-1.6)
P 		26471
(-3)
P 		39143.2
(3)
P 		12672
avr 27689.3
(-3) 		31433.8
(-1) 		31362.9
(-1) 		38808
(3) 		11119

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9921
1 2 3 4 5 6 range
A 27121.6
(1.4)
P 		27066.7
(1.3)
P 		29626.3
(3)
P 		28082.7
(2)
P 		20407.6
(-3)
P 		29534.2
(2.9)
P 		9219
B 23845.7
(-0.1)
P 		25340.7
(1)
P 		28247
(3)
P 		25050.1
(0.8)
P 		19705.8
(-3)
P 		21254.2
(-1.9)
P 		8541
C 22172.5
(-3)
P 		26500.3
(1.1)
P 		28580.4
(3)
P 		28531.8
(3)
P 		23314.7
(-1.9)
P 		25970.3
(0.6)
P 		6408
avr 24379.9
(-0.5) 		26302.6
(1) 		28817.9
(3) 		27221.5
(1.8) 		21142.7
(-3) 		25586.2
(0.5) 		7675
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3925
1 2 3 4 range
A 10141.5
(3)
P 		7359.9
(-1.3)
P 		9253.4
(1.6)
P 		6216.4
(-3)
P 		3925
B 9119.4
(3)
P 		7674.5
(-2.1)
P 		7466.4
(-2.8)
P 		7418.8
(-3)
P 		1701
C 8811
(2.1)
P 		8430.3
(1.2)
P 		9225.9
(3)
P 		6600.2
(-3)
P 		2626
avr 9357.3
(3) 		7821.6
(-0.5) 		8648.6
(1.4) 		6745.1
(-3) 		2612

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4627
1 2 3 4 5 6 range
A 4999.6
(-3)
P 		9626.3
(3)
P 		6452
(-1.1)
P 		7122.4
(-0.2)
P 		6158.1
(-1.5)
P 		7190.7
(-0.2)
P 		4627
B 8297.1
(2.5)
P 		8434.8
(3)
P 		6859.2
(-2.3)
P 		6634.9
(-3)
P 		8006.2
(1.6)
P 		7925.6
(1.3)
P 		1800
C 8218.4
(2)
P 		8086
(1.8)
P 		7274.2
(0.1)
P 		5737.8
(-3)
P 		7544.3
(0.7)
P 		8693.8
(3)
P 		2956
avr 7171.7
(-1.2) 		8715.7
(3) 		6861.8
(-2) 		6498.4
(-3) 		7236.2
(-1) 		7936.7
(0.9) 		2217
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173248_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27627
Sequence Type Exemplar sequence
Representative Public ID CEC0335 NCBI
Target Description CEC0335 /REP_DB=TREMBL Accession /GB=C13033 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk163a3 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063533(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063533 NCBI Caenorhabditis elegans Ribosomal Protein, Large subunit family member (rpl-32) (rpl-32) mRNA, complete cds. 11/11 None
SNAP00000039888 ENSEMBL cdna:SNAP chromosome:CEL140:II:9056444:9056990:-1 11/11 None
GENEFINDER00000039897 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9056444:9056990:-1 11/11 None
T24B8.1.2 ENSEMBL cdna:known chromosome:CEL140:II:9056409:9056996:-1 gene:T24B8.1 11/11 None
T24B8.1.3 ENSEMBL cdna:known chromosome:CEL140:II:9056409:9057021:-1 gene:T24B8.1 11/11 None
T24B8.1.1 ENSEMBL cdna:known chromosome:CEL140:II:9056409:9056995:-1 gene:T24B8.1 11/11 None
T24B8.1.5 ENSEMBL cdna:known chromosome:CEL140:II:9056409:9056997:-1 gene:T24B8.1 11/11 None
T24B8.1.4 ENSEMBL cdna:known chromosome:CEL140:II:9056409:9057230:-1 gene:T24B8.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9056410-9056920(-) 94.36 94.36
Public Domain and Genome References
Gene Title 60S ribosomal protein L32
Gene Symbol rpl-32
Ensembl T24B8.1
Entrez Gene 174443 Entrez gene
SwissProt Q22716 EMBL-EBI
WormBase CE03709 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:254655_S_AT 60S ribosomal protein L32 (RPL32A) at
CANINE:1583560_X_AT similar to 60S ribosomal protein L32 cfa
CANINE:1600607_X_AT similar to 60S ribosomal protein L32 cfa
CANINE_2:CFA.707.2.A1_X_AT similar to 60S ribosomal protein L32 cfa
CANINE_2:CFA.707.4.A1_X_AT similar to 60S ribosomal protein L32 cfa
CANINE_2:CFAAFFX.14068.1.S1_X_AT similar to 60S ribosomal protein L32 cfa
CANINE_2:CFAAFFX.7644.1.S1_X_AT similar to 60S ribosomal protein L32 cfa
DROSOPHILA_2:1625337_S_AT Ribosomal protein L32 dm
DROSGENOME1:143250_AT Ribosomal protein L32 dm
CHICKEN:GGA.9022.1.S1_A_AT ribosomal protein L32 gga
HG-U133A:200674_S_AT ribosomal protein L32 hs
HG-U133_PLUS_2:200674_S_AT ribosomal protein L32 hs
HG-FOCUS:200674_S_AT ribosomal protein L32 hs
HG-U133A_2:200674_S_AT ribosomal protein L32 hs
HU35KSUBC:RC_C14132_F_AT ribosomal protein L32 hs
HUGENEFL:X03342_AT ribosomal protein L32 hs
U133_X3P:G4506634_3P_A_AT ribosomal protein L32 hs
HG-U95AV2:32276_AT ribosomal protein L32 hs
HG-U95E:89800_AT ribosomal protein L32 hs
HG-U95D:83748_AT Ribosomal protein L32 hs
MOUSE430_2:1435897_AT ribosomal protein L32 mm
MOE430B:1435897_AT ribosomal protein L32 mm
MU11KSUBA:AA614984_F_AT ribosomal protein L32 mm
MU11KSUBA:K02060_F_AT ribosomal protein L32 mm
MU11KSUBB:MSA.1147.0_AT Ribosomal protein L32, mRNA (cDNA clone MGC:107610 IMAGE:30122780) mm
MG-U74AV2:99198_AT Ribosomal protein L32, mRNA (cDNA clone MGC:107610 IMAGE:30122780) mm
MG-U74AV2:160478_R_AT Ribosomal protein L32, mRNA (cDNA clone MGC:107610 IMAGE:30122780) mm
MU19KSUBA:TC15268_F_AT Ribosomal protein L32, mRNA (cDNA clone MGC:107610 IMAGE:30122780) mm
MU19KSUBC:TC39496_F_AT Ribosomal protein L32, mRNA (cDNA clone MGC:107610 IMAGE:30122780) mm
RG-U34A:X06483CDS_AT ribosomal protein L32 rn
RAE230A:1384548_AT ribosomal protein L32 rn
RAT230_2:1384548_AT ribosomal protein L32 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92757 Hypothetical protein T24B8.1 [Caenorhabditis elegans] ref|NP_495934.1| Ribosomal Protein, Large subunit family member (rpl-32) [Caenorhabditis elegans] 7.0E-56
blast CAE59794 Hypothetical protein CBG03254 [Caenorhabditis briggsae] 3.0E-54
Protein Domains
Database ID Description E-Value
Pfam IPR001515 EMBL-EBI Ribosomal protein L32e 2.8E-77
Sequence
Target Sequence 
>C. ELEGANS:173248_S_AT
cgacagataccgtcgtgtagccccaagctggcgtaagccaaagggaattgataaccgtgt
ccgcagacgcttccgtggtatgcgtgccatgccaaccatcggtcacggatccgacagaag
aacccgcttcgtccttccaaacggatacaagaaggttctcgtccaaaatgttaaggattt
ggacatgctcctcatgcagtcctacaagtacatcggagagatcggacatggagtctccgc
caagagccgcaagggaatcgtcgagcgcgccgctcagttgaacatcaagctgacgaacgg
aaacgctcgtcttcgcactgaagagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGACAGATACCGTCGTGTAGCCCCA 63 253 17 Antisense
TGTAGCCCCAAGCTGGCGTAAGCCA 34 561 32 Antisense
AATTGATAACCGTGTCCGCAGACGC 392 173 62 Antisense
GCAGACGCTTCCGTGGTATGCGTGC 562 311 79 Antisense
AACCATCGGTCACGGATCCGACAGA 710 145 110 Antisense
ATCCGACAGAAGAACCCGCTTCGTC 89 37 125 Antisense
GCTTCGTCCTTCCAAACGGATACAA 43 305 142 Antisense
TTTGGACATGCTCCTCATGCAGTCC 255 667 194 Antisense
GAGATCGGACATGGAGTCTCCGCCA 687 395 234 Antisense
TCGAGCGCGCCGCTCAGTTGAACAT 15 603 277 Antisense
AACGCTCGTCTTCGCACTGAAGAGT 37 147 318 Antisense
Sequence Source Affymetrix Proprietary Database