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[173247_s_at] acyl-CoA-binding protein

Description C42500 /REP_DB=TREMBL Accession /GB=C42500 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk312c10 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 36      6grp_high1_10_10 > 53      4grp_highest_8_8 > 10      4grp_high_8_8 > 54      6grp_highest_nonorm > 29      6grp_total > 53      4grp_total > 57      6grp_highest_sub > 03      6grp_cgc > 92      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9344
1 2 3 4 range
A 7556.8
(-2)
P 		12907.6
(1.7)
P 		14815.4
(3)
P 		6052.7
(-3)
P 		8763
B 8103.8
(-1.8)
P 		12206.2
(0.9)
P 		15396.3
(3)
P 		6297.2
(-3)
P 		9099
C 7112
(-2.3)
P 		11918.1
(1.7)
P 		13512.2
(3)
P 		6245.9
(-3)
P 		7266
avr 7590.9
(-2) 		12344
(1.4) 		14574.6
(3) 		6198.6
(-3) 		8376

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7883
1 2 3 4 5 6 range
A 12433.5
(-1.3)
P 		11800.6
(-1.9)
P 		17220.6
(3)
P 		13544.1
(-0.3)
P 		10615.8
(-3)
P 		11887.8
(-1.8)
P 		6605
B 9443.4
(-3)
P 		12823.3
(-0)
P 		16270.8
(3)
P 		11260.3
(-1.4)
P 		11442.7
(-1.2)
P 		10999.2
(-1.6)
P 		6827
C 9338
(-3)
P 		13687.7
(2)
P 		14358.5
(2.7)
P 		14607.8
(3)
P 		9554.9
(-2.8)
P 		12680.5
(0.8)
P 		5270
avr 10405
(-3) 		12770.5
(-0.4) 		15950
(3) 		13137.4
(-0) 		10537.8
(-2.9) 		11855.8
(-1.4) 		5545
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3823
1 2 3 4 range
A 2751.4
(0.7)
P 		2801.9
(0.8)
P 		3873
(3)
P 		886
(-3)
P 		2987
B 2584.2
(0.3)
P 		3014.6
(1.5)
P 		3567.7
(3)
P 		1341.9
(-3)
P 		2226
C 2354.3
(-0.9)
P 		3426.5
(0.9)
P 		4709.4
(3)
P 		1053.1
(-3)
P 		3656
avr 2563.3
(-0) 		3081
(1) 		4050
(3) 		1093.7
(-3) 		2956

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2357
1 2 3 4 5 6 range
A 2292
(-3)
P 		4196.9
(3)
P 		3750.3
(1.6)
P 		3435.1
(0.6)
P 		3203.4
(-0.1)
P 		2894.3
(-1.1)
P 		1905
B 3285.8
(-1.9)
P 		4268.3
(1.6)
P 		3951
(0.5)
P 		2982.5
(-3)
P 		4649
(3)
P 		4101.6
(1)
P 		1667
C 3461.2
(-0.6)
P 		4176.5
(2.7)
P 		3654.5
(0.3)
P 		2937.6
(-3)
P 		3091.8
(-2.3)
P 		4244.9
(3)
P 		1307
avr 3013
(-3) 		4213.9
(3) 		3785.3
(0.9) 		3118.4
(-2.5) 		3648.1
(0.2) 		3746.9
(0.7) 		1201
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173247_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27628
Sequence Type Exemplar sequence
Representative Public ID C42500 NCBI
Target Description C42500 /REP_DB=TREMBL Accession /GB=C42500 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk312c10 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059011(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059011 NCBI Caenorhabditis elegans Acyl-Coenzyme A Binding Protein family member (acbp-1) (acbp-1) mRNA, complete cds. 11/11 None
C44E4.6.3 ENSEMBL cdna:known chromosome:CEL140:I:4635441:4636380:-1 gene:C44E4.6 11/11 None
C44E4.6.2 ENSEMBL cdna:known chromosome:CEL140:I:4635441:4636376:-1 gene:C44E4.6 11/11 None
C44E4.6.4 ENSEMBL cdna:known chromosome:CEL140:I:4635716:4636380:-1 gene:C44E4.6 11/11 None
C44E4.6.1 ENSEMBL cdna:known chromosome:CEL140:I:4635731:4636391:-1 gene:C44E4.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4635747-4636065(-) 83.68 83.68
Public Domain and Genome References
Gene Title acyl-CoA-binding protein
Gene Symbol acbp-1
Ensembl C44E4.6
Entrez Gene 172071 Entrez gene
SwissProt O01805 EMBL-EBI
WormBase CE08720 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1625572_S_AT Diazepam-binding inhibitor dm
DROSGENOME1:143608_AT Diazepam-binding inhibitor dm
CHICKEN:GGA.3118.1.S1_AT diazepam binding inhibitor (GABA receptor modulator, acyl-Coenzyme A binding protein) gga
HG-U133A:209389_X_AT diazepam binding inhibitor (GABA receptor modulator, acyl-Coenzyme A binding protein) hs
HG-U133_PLUS_2:209389_X_AT diazepam binding inhibitor (GABA receptor modulator, acyl-Coenzyme A binding protein) hs
HG-U133A_2:209389_X_AT diazepam binding inhibitor (GABA receptor modulator, acyl-Coenzyme A binding protein) hs
HG-U133_PLUS_2:202428_X_AT diazepam binding inhibitor (GABA receptor modulator, acyl-Coenzyme A binding protein) hs
HG-U133A:202428_X_AT diazepam binding inhibitor (GABA receptor modulator, acyl-Coenzyme A binding protein) hs
HG-FOCUS:202428_X_AT diazepam binding inhibitor (GABA receptor modulator, acyl-Coenzyme A binding protein) hs
HG-U133A_2:202428_X_AT diazepam binding inhibitor (GABA receptor modulator, acyl-Coenzyme A binding protein) hs
HG-U133_PLUS_2:211070_X_AT diazepam binding inhibitor (GABA receptor modulator, acyl-Coenzyme A binding protein) hs
HG-U133A:211070_X_AT diazepam binding inhibitor (GABA receptor modulator, acyl-Coenzyme A binding protein) hs
HG-U133A_2:211070_X_AT diazepam binding inhibitor (GABA receptor modulator, acyl-Coenzyme A binding protein) hs
HUGENEFL:X94563_XPT2_R_AT diazepam binding inhibitor (GABA receptor modulator, acyl-Coenzyme A binding protein) hs
HUGENEFL:M14200_RNA1_AT diazepam binding inhibitor (GABA receptor modulator, acyl-Coenzyme A binding protein) hs
U133_X3P:G181960_3P_S_AT diazepam binding inhibitor (GABA receptor modulator, acyl-Coenzyme A binding protein) hs
HG-U95AV2:37692_AT diazepam binding inhibitor (GABA receptor modulator, acyl-Coenzyme A binding protein) hs
MG-U74AV2:97248_AT diazepam binding inhibitor mm
MOE430A:1455976_X_AT diazepam binding inhibitor mm
MOUSE430A_2:1455976_X_AT diazepam binding inhibitor mm
MOUSE430_2:1455976_X_AT diazepam binding inhibitor mm
MOUSE430A_2:1422432_AT diazepam binding inhibitor mm
MOE430A:1422432_AT diazepam binding inhibitor mm
MOUSE430_2:1422432_AT diazepam binding inhibitor mm
MU11KSUBB:X61431_F_AT diazepam binding inhibitor mm
MU11KSUBB:MSA.24217.0_F_AT diazepam binding inhibitor mm
MU11KSUBB:MSA.2256.0_AT diazepam binding inhibitor mm
MG-U74CV2:169069_I_AT diazepam binding inhibitor mm
MOE430A:1438093_X_AT diazepam binding inhibitor mm
MOUSE430A_2:1438093_X_AT diazepam binding inhibitor mm
MOUSE430_2:1438093_X_AT diazepam binding inhibitor mm
MOE430A:1433991_X_AT diazepam binding inhibitor mm
MOUSE430A_2:1433991_X_AT diazepam binding inhibitor mm
MOUSE430_2:1433991_X_AT diazepam binding inhibitor mm
MU19KSUBA:TC14630_AT Diazepam binding inhibitor, mRNA (cDNA clone MGC:18631 IMAGE:4194069) mm
RG-U34A:RC_AI010581_AT diazepam binding inhibitor rn
RAE230A:1370235_AT diazepam binding inhibitor rn
RAT230_2:1370235_AT diazepam binding inhibitor rn
YEAST_2:1774948_AT Acyl-CoA-binding protein, transports newly synthesized acyl-CoA esters from fatty acid synthetase (Fas1p-Fas2p) to acyl-CoA-consuming processes Sc
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
62 acyl-CoA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB54171 Hypothetical protein C44E4.6 [Caenorhabditis elegans] ref|NP_491412.1| Acyl-Coenzyme A Binding Protein family member (acbp-1) [Caenorhabditis elegans] sp|O01805|ACBP_CAEEL Acyl-CoA-binding protein homolog (ACBP) (Diazepam binding inhibitor homolog) (DBI) 6.0E-43
blast CAE74488 Hypothetical protein CBG22239 [Caenorhabditis briggsae] 3.0E-35
Protein Domains
Database ID Description E-Value
Pfam IPR000582 EMBL-EBI Acyl-coA-binding protein, ACBP 2.6E-53
Sequence
Target Sequence 
>C. ELEGANS:173247_S_AT
tcaagacttccccatcgaatgatgagcttctcaagctctatgctctgttcaaacaaggaa
ccgtcggcgacaacaccaccgataagccaggaatgttcgatttgaagggaaaagccaagt
ggtctgcctgggatgagaagaagggactcgcaaaggatgatgctcagaaggcctatgttg
ctcttgttgaggagctcatcgccaagtacggagcct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAAGACTTCCCCATCGAATGATGA 563 629 92 Antisense
GATGAGCTTCTCAAGCTCTATGCTC 682 411 112 Antisense
AAGCTCTATGCTCTGTTCAAACAAG 466 149 124 Antisense
GACAACACCACCGATAAGCCAGGAA 703 363 160 Antisense
AAGCCAGGAATGTTCGATTTGAAGG 15 149 175 Antisense
GGAAAAGCCAAGTGGTCTGCCTGGG 233 527 199 Antisense
AGTGGTCTGCCTGGGATGAGAAGAA 120 59 209 Antisense
GATGATGCTCAGAAGGCCTATGTTG 448 411 247 Antisense
CAGAAGGCCTATGTTGCTCTTGTTG 389 203 256 Antisense
GTTGCTCTTGTTGAGGAGCTCATCG 508 439 268 Antisense
GAGCTCATCGCCAAGTACGGAGCCT 119 387 283 Antisense
Sequence Source Affymetrix Proprietary Database