[Home] | [Total List]

[173245_s_at]

Description C59804 /REP_DB=TREMBL Accession /GB=C59804 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk443a10 : 3prime end, single read.
Cluster 6grp_total > 99      4grp_total > 18      6grp_total_sub > Increase      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 268
1 2 3 4 range
A 47.1
(-3)
A 		91.5
(-1.9)
A 		80.2
(-2.2)
A 		285.6
(3)
P 		239
B 18
(-3)
A 		129.4
(0.3)
A 		26.3
(-2.8)
A 		219.3
(3)
P 		201
C 57.3
(-2.9)
A 		120.7
(-0.4)
A 		55.4
(-3)
A 		205.3
(3)
P 		150
avr 40.8
(-3) 		113.9
(-0.8) 		54
(-2.6) 		236.7
(3) 		196

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2202
1 2 3 4 5 6 range
A 28.2
(-3)
A 		65.4
(-2.9)
A 		18.2
(-3)
A 		82.1
(-2.8)
A 		1730.3
(2.1)
P 		2044.7
(3)
P 		2027
B 16.9
(-3)
A 		28
(-3)
A 		17.8
(-3)
A 		47.3
(-2.9)
A 		1697.1
(3)
P 		1639.4
(2.8)
P 		1680
C 16.3
(-3)
A 		68.9
(-2.9)
A 		17.8
(-3)
A 		105.6
(-2.8)
A 		2218.7
(3)
P 		1285
(0.5)
P 		2202
avr 20.5
(-3) 		54.1
(-2.9) 		17.9
(-3) 		78.3
(-2.8) 		1882
(3) 		1656.4
(2.3) 		1864
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 17.1
(-3)
A 		19.9
(-2.3)
A 		21
(-2.1)
A 		41.8
(3)
P 		25
B 5.8
(-3)
A 		32
(0.8)
A 		6.1
(-3)
A 		46.7
(3)
P 		41
C 19
(-3)
A 		34.7
(3)
A 		19.3
(-2.9)
A 		34.6
(3)
P 		16
avr 14
(-3) 		28.9
(0.3) 		15.5
(-2.7) 		41
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 714
1 2 3 4 5 6 range
A 5.2
(-3)
A 		23.3
(-2.8)
A 		4
(-3)
A 		20.8
(-2.8)
A 		522.1
(3)
P 		497.8
(2.7)
P 		518
B 5.9
(-3)
A 		9.3
(-3)
A 		4.3
(-3)
A 		12.5
(-2.9)
A 		689.5
(3)
P 		611.3
(2.3)
P 		685
C 6.1
(-3)
A 		21
(-2.9)
A 		4.5
(-3)
A 		21.2
(-2.9)
A 		718
(3)
P 		430.2
(0.6)
P 		714
avr 5.7
(-3) 		17.9
(-2.9) 		4.3
(-3) 		18.2
(-2.9) 		643.2
(3) 		513.1
(1.8) 		639
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173245_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27593
Sequence Type Exemplar sequence
Representative Public ID C59804 NCBI
Target Description C59804 /REP_DB=TREMBL Accession /GB=C59804 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk443a10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067640(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067640 NCBI Caenorhabditis elegans C44B12.5 (C44B12.5) mRNA, complete cds. 11/11 A 
SNAP00000002999 ENSEMBL cdna:SNAP chromosome:CEL140:IV:1121582:1125127:-1 11/11 None
GENEFINDER00000003007 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:1121582:1125085:-1 11/11 None
C44B12.5 ENSEMBL cdna:known chromosome:CEL140:IV:1121495:1125283:-1 gene:C44B12.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1121566-1121920(-) 82.9 82.9
Public Domain and Genome References
Gene Title
Ensembl C44B12.5
Entrez Gene 176932 Entrez gene
SwissProt O44144 EMBL-EBI
WormBase CE16921 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500041 C44B12.5 [Caenorhabditis elegans] gb|AAB88328.1| Hypothetical protein C44B12.5 [Caenorhabditis elegans] 1.0E-128
blast NP_500041 C44B12.5 [Caenorhabditis elegans] gb|AAB88328.1| Hypothetical protein C44B12.5 [Caenorhabditis elegans] 1.0E-105
blast NP_500041 C44B12.5 [Caenorhabditis elegans] gb|AAB88328.1| Hypothetical protein C44B12.5 [Caenorhabditis elegans] 5.0E-96
blast CAE68279 Hypothetical protein CBG13962 [Caenorhabditis briggsae] 5.0E-60
blast CAE68279 Hypothetical protein CBG13962 [Caenorhabditis briggsae] 6.0E-60
blast CAE68279 Hypothetical protein CBG13962 [Caenorhabditis briggsae] 7.0E-60
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500041.1 1 23-45
C44B12.5 1 23-45
Sequence
Target Sequence 
>C. ELEGANS:173245_S_AT
cagaacccatcctacaacaacaatgctgctcaatccccaccaactggctacaacaacaac
gccaacgccttcgtccagccaacaaccagtagctgctcagtccccaccaatgtcagcctc
ccagccactcgttgacctctggcaatccgagaatactgctccatcaacatcatggggagc
tgctccagctgctccatcaacatcatggggagctgctccagctgctccaccaacctgggg
aggtgctccaactgctgctccaacttggggagccgccaatgatgctccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGAACCCATCCTACAACAACAATG 99 205 85 Antisense
ATCCTACAACAACAATGCTGCTCAA 464 39 93 Antisense
CCACCAACTGGCTACAACAACAACG 381 273 121 Antisense
ACTCGTTGACCTCTGGCAATCCGAG 609 95 211 Antisense
GGCAATCCGAGAATACTGCTCCATC 699 533 225 Antisense
TCCGAGAATACTGCTCCATCAACAT 193 585 230 Antisense
ATCAACATCATGGGGAGCTGCTCCA 370 27 280 Antisense
GCTCCACCAACCTGGGGAGGTGCTC 309 297 308 Antisense
CAACCTGGGGAGGTGCTCCAACTGC 43 187 315 Antisense
TGCTGCTCCAACTTGGGGAGCCGCC 623 581 337 Antisense
TGGGGAGCCGCCAATGATGCTCCAC 500 553 350 Antisense
Sequence Source Affymetrix Proprietary Database