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[173244_at]

Description CEC6421 /REP_DB=TREMBL Accession /GB=C08642 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk136h3 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 90      6grp_high1_10_10 > 19      4grp_highest_8_8 > 20      4grp_high_8_8 > 39      6grp_highest_nonorm > 14      6grp_total > 16      4grp_total > 32      6grp_total_sub > Decrease      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2595
1 2 3 4 range
A 4815.1
(-3)
P 		6261.9
(1.1)
P 		6932.1
(3)
P 		6324.6
(1.3)
P 		2117
B 4408.9
(-3)
P 		4509.7
(-2.8)
P 		7004.1
(3)
P 		6675.3
(2.2)
P 		2595
C 4506.3
(-3)
P 		4938.8
(-1.9)
P 		6763
(3)
P 		5108.8
(-1.4)
P 		2257
avr 4576.8
(-3) 		5236.8
(-1.3) 		6899.7
(3) 		6036.2
(0.8) 		2323

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3909
1 2 3 4 5 6 range
A 4592.7
(1.4)
P 		4757.7
(1.7)
P 		5523.3
(3)
P 		3029.5
(-1.3)
P 		4042.1
(0.4)
P 		2077.9
(-3)
P 		3445
B 5218.1
(2.7)
P 		5366.9
(3)
P 		3821.7
(-0.1)
P 		2385.2
(-3)
P 		5126.7
(2.5)
P 		4715.3
(1.7)
P 		2982
C 4877.6
(3)
P 		4346.6
(2)
P 		2136.2
(-2)
P 		1736.2
(-2.8)
P 		4856.8
(3)
P 		1614.1
(-3)
P 		3264
avr 4896.1
(3) 		4823.7
(2.8) 		3827.1
(0.4) 		2383.6
(-3) 		4675.2
(2.5) 		2802.4
(-2) 		2513
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1496
1 2 3 4 range
A 1753.2
(2.6)
P 		1359.3
(-0.1)
P 		1812.2
(3)
P 		925.8
(-3)
P 		886
B 1406
(0.4)
P 		1113.8
(-3)
P 		1623
(3)
P 		1422.5
(0.6)
P 		509
C 1491.7
(-0.5)
P 		1419.9
(-0.8)
P 		2357.1
(3)
P 		861.4
(-3)
P 		1496
avr 1550.3
(0.3) 		1297.7
(-1.4) 		1930.8
(3) 		1069.9
(-3) 		861

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1734
1 2 3 4 5 6 range
A 846.6
(-1.3)
P 		1692.1
(3)
P 		1202.9
(0.5)
P 		768.4
(-1.7)
P 		1219.7
(0.6)
P 		505.9
(-3)
P 		1186
B 1815.6
(1.9)
P 		1786.4
(1.8)
P 		928
(-1.8)
P 		631.8
(-3)
P 		2082.9
(3)
P 		1758.3
(1.7)
P 		1451
C 1807.9
(3)
P 		1326.3
(1)
P 		543.7
(-2.2)
P 		349.1
(-3)
P 		1571.6
(2)
P 		540.3
(-2.2)
P 		1459
avr 1490
(2.2) 		1601.6
(2.9) 		891.5
(-1.2) 		583.1
(-3) 		1624.7
(3) 		934.8
(-1) 		1042
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173244_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27914
Sequence Type Exemplar sequence
Representative Public ID CEC6421 NCBI
Target Description CEC6421 /REP_DB=TREMBL Accession /GB=C08642 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk136h3 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069233
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F49C12.11.2 ENSEMBL cdna:known chromosome:CEL140:IV:9319355:9320498:1 gene:F49C12.11 A 
F49C12.11.1 ENSEMBL cdna:known chromosome:CEL140:IV:9319357:9320124:1 gene:F49C12.11 A 
SNAP00000032699 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9319369:9319943:1 None
NM_069233 NCBI Caenorhabditis elegans F49C12.11 (F49C12.11) mRNA, complete cds. A 
GENEFINDER00000032706 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9319369:9319943:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9319378-9320126(+) 93.28 93.28
Public Domain and Genome References
Gene Title
Ensembl F49C12.11
Entrez Gene 177756 Entrez gene
SwissProt Q20588 EMBL-EBI
WormBase CE03371 Wormbase
Sequence
Target Sequence 
>C. ELEGANS:173244_AT
gaagcaacaagaggtagcccacaaagatcaaggagatggcagccaaggctggacaacgtg
gaccacttctcggtggaggaatcaagaaatcaggaaagaagtaattgcctcggtcaaata
ttatgccatctcatccgcaacctctgttattaattcgtcaaatgactcgttatttcatcc
atttaccgttccatattttacatattcttcgttccgttctgctcattccctgtgngataa
tttcaacatcactatatttcta

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCAACAAGAGGTAGCCCACAAA 284 341 107 Antisense
GAGGTAGCCCACAAAGATCAAGGAG 467 403 117 Antisense
GGAAAGAAGTAATTGCCTCGGTCAA 123 525 199 Antisense
GCCTCGGTCAAATATTATGCCATCT 355 281 213 Antisense
AATATTATGCCATCTCATCCGCAAC 23 175 223 Antisense
CTCATCCGCAACCTCTGTTATTAAT 338 229 236 Antisense
GTCAAATGACTCGTTATTTCATCCA 149 465 263 Antisense
ATTTCATCCATTTACCGTTCCATAT 94 17 278 Antisense
CATTTACCGTTCCATATTTTACATA 319 215 286 Antisense
TTTTACATATTCTTCGTTCCGTTCT 667 675 302 Antisense
TAATTTCAACATCACTATATTTCTA 257 635 344 Antisense
Sequence Source Affymetrix Proprietary Database