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[173243_s_at] 60S ribosomal protein L24

Description CEK099E8F /REP_DB=TREMBL Accession /GB=D70132 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk99e8 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 15      6grp_high1_10_10 > 40      4grp_highest_8_8 > 06      4grp_high_8_8 > 22      6grp_highest_nonorm > 09      6grp_total > 51      4grp_total > 17      6grp_highest_sub > 03      6grp_cgc > 93      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19996
1 2 3 4 range
A 26209.2
(-3)
P 		38329.3
(0.6)
P 		33778.1
(-0.7)
P 		46205.5
(3)
P 		19996
B 27641.4
(-3)
P 		30798.9
(-0.7)
P 		34315.9
(1.9)
P 		35788.9
(3)
P 		8148
C 26647
(-2.9)
P 		27708.2
(-2.5)
P 		26244
(-3)
P 		42751.6
(3)
P 		16508
avr 26832.5
(-3) 		32278.8
(-0.8) 		31446
(-1.1) 		41582
(3) 		14750

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11641
1 2 3 4 5 6 range
A 32097
(3)
P 		24254.5
(-2.1)
P 		30656.5
(2.1)
P 		28699.4
(0.8)
P 		22888.1
(-3)
P 		27648.2
(0.1)
P 		9209
B 24195.7
(-0.6)
P 		24125.6
(-0.7)
P 		29946.8
(3)
P 		25569.7
(0.2)
P 		20456.2
(-3)
P 		20837.1
(-2.8)
P 		9491
C 22228.9
(-2.7)
P 		25965.1
(0.4)
P 		29239
(3)
P 		28283.8
(2.2)
P 		24503.6
(-0.8)
P 		21804.3
(-3)
P 		7435
avr 26173.9
(-0.1) 		24781.7
(-1.2) 		29947.4
(3) 		27517.6
(1) 		22616
(-3) 		23429.9
(-2.3) 		7331
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2779
1 2 3 4 range
A 9542.8
(3)
P 		8320.3
(0.4)
P 		8830.2
(1.5)
P 		6763.6
(-3)
P 		2779
B 8814.6
(3)
P 		7606.6
(-3)
P 		7951.8
(-1.3)
P 		7626.6
(-2.9)
P 		1208
C 8820.9
(2)
P 		7966.3
(-0.7)
P 		9146.8
(3)
P 		7208.6
(-3)
P 		1938
avr 9059.4
(3) 		7964.4
(-0.5) 		8642.9
(1.7) 		7199.6
(-3) 		1860

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2938
1 2 3 4 5 6 range
A 5916.8
(-3)
P 		8626.1
(3)
P 		6676.3
(-1.3)
P 		7278.8
(0)
P 		6906.6
(-0.8)
P 		6731.5
(-1.2)
P 		2709
B 8418.9
(3)
P 		8030.4
(1.6)
P 		7272
(-1.2)
P 		6772.5
(-3)
P 		8311.1
(2.6)
P 		7770.1
(0.6)
P 		1646
C 8239.3
(3)
P 		7922.7
(2.3)
P 		7441.8
(1.1)
P 		5687.9
(-3)
P 		7929
(2.3)
P 		7299.2
(0.8)
P 		2551
avr 7525
(0.5) 		8193.1
(3) 		7130
(-1) 		6579.7
(-3) 		7715.6
(1.2) 		7266.9
(-0.4) 		1613
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173243_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27659
Sequence Type Exemplar sequence
Representative Public ID CEK099E8F NCBI
Target Description CEK099E8F /REP_DB=TREMBL Accession /GB=D70132 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk99e8 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058998(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058998 NCBI Caenorhabditis elegans Ribosomal Protein, Large subunit family member (rpl-24.1) (rpl-24.1) mRNA, complete cds. 11/11 A 
SNAP00000011282 ENSEMBL cdna:SNAP chromosome:CEL140:I:4585142:4586139:1 11/11 None
GENEFINDER00000011305 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4585142:4586139:1 11/11 None
D1007.12.2 ENSEMBL cdna:known chromosome:CEL140:I:4585114:4586178:1 gene:D1007.12 11/11 None
D1007.12.1 ENSEMBL cdna:known chromosome:CEL140:I:4585116:4586184:1 gene:D1007.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4585589-4586178(+) 85.97 85.97
Public Domain and Genome References
Gene Title 60S ribosomal protein L24
Gene Symbol rpl-24.1
Ensembl D1007.12
Entrez Gene 172062 Entrez gene
SwissProt O01868 EMBL-EBI
WormBase CE09047 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:251997_AT 60S ribosomal protein L24 (RPL24B) at
CANINE:1584020_X_AT similar to ribosomal protein L24 cfa
CANINE:1596987_AT similar to ribosomal protein L24 cfa
CANINE_2:CFA.791.1.A1_S_AT similar to ribosomal protein L24 cfa
DROSOPHILA_2:1641600_AT Ribosomal protein L24 dm
DROSGENOME1:146336_AT Ribosomal protein L24 dm
CHICKEN:GGA.4583.1.S1_A_AT similar to Rpl24 protein gga
CHICKEN:GGA.4583.1.S1_X_AT similar to Rpl24 protein gga
HG-FOCUS:200013_AT ribosomal protein L24 hs
PLASMODIUM_ANOPHELES:200013_AT ribosomal protein L24 hs
HG-U133_PLUS_2:200013_AT ribosomal protein L24 hs
HG-U133A:200013_AT ribosomal protein L24 hs
HG-U133B:200013_AT ribosomal protein L24 hs
HG-U133A_2:200013_AT ribosomal protein L24 hs
U133_X3P:200013_AT ribosomal protein L24 hs
HUGENEFL:D13413_RNA1_S_AT ribosomal protein L24 hs
U133_X3P:G4506618_3P_AT ribosomal protein L24 hs
U133_X3P:G4506618_3P_A_AT ribosomal protein L24 hs
HG-U133A_2:214143_X_AT ribosomal protein L24 hs
HG-U133_PLUS_2:214143_X_AT ribosomal protein L24 hs
HG-U133A:214143_X_AT ribosomal protein L24 hs
HG-U95AV2:33677_AT ribosomal protein L24 hs
HG-U95C:64352_S_AT ribosomal protein L24 hs
HG-U95C:60549_AT Ribosomal protein L24 hs
MOUSE430_2:1447653_X_AT ribosomal protein L24 mm
MOE430A:1447653_X_AT ribosomal protein L24 mm
MOUSE430A_2:1447653_X_AT ribosomal protein L24 mm
MU11KSUBB:W97389_AT ribosomal protein L24 mm
MG-U74AV2:161127_I_AT ribosomal protein L24 mm
MOE430A:1460201_A_AT ribosomal protein L24 mm
MOUSE430A_2:1460201_A_AT ribosomal protein L24 mm
MOUSE430_2:1460201_A_AT ribosomal protein L24 mm
MU19KSUBA:TC18400_F_AT Ribosomal protein L24, mRNA (cDNA clone MGC:106601 IMAGE:30612436) mm
MU19KSUBA:TC18401_F_AT Ribosomal protein L24 (Rpl24), mRNA mm
MU19KSUBC:TC42037_F_AT Ribosomal protein L24 (Rpl24), mRNA mm
RG-U34A:RC_AA817997_AT ribosomal protein L24 rn
RG-U34A:RC_AA817997_G_AT ribosomal protein L24 rn
RAE230A:1398854_AT ribosomal protein L24 rn
RAT230_2:1398854_AT ribosomal protein L24 rn
RAE230B:1396812_AT Ribosomal protein L24 rn
RAT230_2:1396812_AT Ribosomal protein L24 rn
YEAST_2:1770612_AT Ribosomal protein L30 of the large (60S) ribosomal subunit, nearly identical to Rpl24Ap and has similarity to rat L24 ribosomal protein; not essential for translation but may be required for normal translation rate Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK18907 Ribosomal protein, large subunit protein 24.1 [Caenorhabditis elegans] ref|NP_491399.1| Ribosomal Protein, Large subunit family member (rpl-24.1) [Caenorhabditis elegans] sp|O01868|RL24_CAEEL 60S ribosomal protein L24 8.0E-72
blast CAE74519 Hypothetical protein CBG22273 [Caenorhabditis briggsae] 2.0E-66
Protein Domains
Database ID Description E-Value
Pfam IPR000988 EMBL-EBI Ribosomal protein L24E 5.8E-30
Sequence
Target Sequence 
>C. ELEGANS:173243_S_AT
gggaacccacggacaagagcaagtcaccaganagnagaccaagaagtccgtccaggttgt
taaccgcgccgtcgctggactttcccttgatgctatccttgccaagagaaaccagaccga
agacttccgtcgccaacagcgtgaacaagccgctaagatcgccaaggatgccaacaaggc
tgtccgtgccgccaaggctgctgccaacaaggaaaagaaggcctctcagccaaagaccca
gcaaaagaccgccaagaatgtgaagactgctgctccacgtgtcggaggaaagc

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGAACCCACGGACAAGAGCAAGTC 586 493 56 Antisense
AGACCAAGAAGTCCGTCCAGGTTGT 81 69 91 Antisense
TCCCTTGATGCTATCCTTGCCAAGA 441 597 138 Antisense
GAAACCAGACCGAAGACTTCCGTCG 585 353 163 Antisense
CTTCCGTCGCCAACAGCGTGAACAA 211 219 179 Antisense
GAACAAGCCGCTAAGATCGCCAAGG 304 353 198 Antisense
AGGATGCCAACAAGGCTGTCCGTGC 56 57 220 Antisense
AAGAAGGCCTCTCAGCCAAAGACCC 578 149 270 Antisense
AAAGACCCAGCAAAAGACCGCCAAG 554 121 287 Antisense
GAATGTGAAGACTGCTGCTCCACGT 107 333 311 Antisense
GCTGCTCCACGTGTCGGAGGAAAGC 604 297 324 Antisense
Sequence Source Affymetrix Proprietary Database