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[173240_s_at]

Description CEC594_rc /REP_DB=TREMBL Accession /GB=C07594 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk143a4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 90      6grp_high1_10_10 > 09      4grp_highest_8_8 > 20      4grp_high_8_8 > 39      6grp_highest_nonorm > 47      6grp_total > 92      4grp_total > 32      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1951
1 2 3 4 range
A 6987.7
(-3)
P 		7777.7
(3)
P 		7433.9
(0.4)
P 		7378
(-0)
P 		790
B 6920.1
(0.7)
P 		5989.6
(-3)
P 		7491.9
(3)
P 		6762.4
(0.1)
P 		1502
C 5826.3
(-3)
P 		6296.6
(0.5)
P 		6567.4
(2.4)
P 		6643.6
(3)
P 		817
avr 6578
(-3) 		6688
(-1.9) 		7164.4
(3) 		6928
(0.6) 		586

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2164
1 2 3 4 5 6 range
A 3722.8
(2.8)
P 		3242.6
(0.3)
P 		3310
(0.6)
P 		3619
(2.3)
P 		3757.9
(3)
P 		2624.8
(-3)
P 		1133
B 3626.5
(-0.2)
P 		3482.1
(-0.7)
P 		3457.7
(-0.7)
P 		3186.2
(-1.6)
P 		4675.7
(3)
P 		2714.2
(-3)
P 		1962
C 3556.6
(3)
P 		2793.8
(-1.4)
P 		3328.4
(1.7)
P 		3232.8
(1.1)
P 		3549.7
(3)
P 		2512
(-3)
P 		1045
avr 3635.3
(1.4) 		3172.8
(-0.6) 		3365.4
(0.3) 		3346
(0.2) 		3994.4
(3) 		2617
(-3) 		1377
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1464
1 2 3 4 range
A 2544.2
(3)
P 		1688.3
(-0.5)
P 		1943.4
(0.5)
P 		1080
(-3)
P 		1464
B 2206.8
(3)
P 		1479.3
(-2.7)
P 		1736
(-0.7)
P 		1441.1
(-3)
P 		766
C 1928.7
(1.2)
P 		1810.3
(0.5)
P 		2288.9
(3)
P 		1120.2
(-3)
P 		1169
avr 2226.6
(3) 		1659.3
(-0.4) 		1989.4
(1.6) 		1213.8
(-3) 		1013

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1261
1 2 3 4 5 6 range
A 686.3
(-2.4)
P 		1153.2
(3)
P 		720.8
(-2)
P 		917.9
(0.3)
P 		1134
(2.8)
P 		639.1
(-3)
P 		514
B 1261.8
(-0.6)
P 		1159
(-1.2)
P 		839.6
(-3)
P 		843.9
(-3)
P 		1899.7
(3)
P 		1012.1
(-2)
P 		1060
C 1318.3
(3)
P 		852.5
(-1.2)
P 		847.1
(-1.2)
P 		650.1
(-3)
P 		1148.6
(1.5)
P 		840.9
(-1.3)
P 		668
avr 1088.8
(-0.1) 		1054.9
(-0.4) 		802.5
(-3) 		804
(-3) 		1394.1
(3) 		830.7
(-2.7) 		592
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173240_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27966
Sequence Type Exemplar sequence
Representative Public ID CEC594 NCBI
Target Description CEC594_rc /REP_DB=TREMBL Accession /GB=C07594 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk143a4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171273(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171273 NCBI Caenorhabditis elegans K08D12.3a (K08D12.3) mRNA, complete cds. 11/11 A 
SNAP00000039171 ENSEMBL cdna:SNAP chromosome:CEL140:IV:1710265:1710919:1 11/11 None
GENEFINDER00000039180 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:1710265:1710919:1 11/11 None
K08D12.3a.1 ENSEMBL cdna:known chromosome:CEL140:IV:1710256:1711126:1 gene:K08D12.3 11/11 None
K08D12.3a.2 ENSEMBL cdna:known chromosome:CEL140:IV:1710263:1711126:1 gene:K08D12.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_171274 6/11 Cross Hyb Matching Probes None
K08D12.3b 6/11 Cross Hyb Matching Probes A 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
176979 2 1 NM_171273 173240_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1710634-1711061(+) 97.25 97.25
Public Domain and Genome References
Ensembl K08D12.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK84542 Hypothetical protein K08D12.3a [Caenorhabditis elegans] ref|NP_741323.1| K08D12.3a [Caenorhabditis elegans] 2.0E-52
blast CAE67981 Hypothetical protein CBG13587 [Caenorhabditis briggsae] 1.0E-41
Protein Domains
Database ID Description E-Value
Pfam IPR001878 EMBL-EBI Zn-finger, CCHC type 2.0E-8
Pfam IPR001878 EMBL-EBI Zn-finger, CCHC type 4.8E-9
Pfam IPR001878 EMBL-EBI Zn-finger, CCHC type 5.5E-8
Pfam IPR001878 EMBL-EBI Zn-finger, CCHC type 1.4E-8
Pfam IPR001878 EMBL-EBI Zn-finger, CCHC type 8.7E-8
Sequence
Target Sequence 
>C. ELEGANS:173240_S_AT
ggatcgtgctacaactgcggaggacgtggacactactctcgtgactgcccatccgccaga
tctgagggaggaagcggtggctacggaggccgcggtggagaaggcagaagcttcggcgga
caaaagtgctacaattgcggacgctccgggcacatttcccgcgagtgcaccgagagtggc
tcggccgaggagaagcgttgctaccagtgccaggagaccggacacatctccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATCGTGCTACAACTGCGGAGGAC 119 513 46 Antisense
TGCGGAGGACGTGGACACTACTCTC 58 583 61 Antisense
CCCATCCGCCAGATCTGAGGGAGGA 335 259 93 Antisense
GGGAGGAAGCGGTGGCTACGGAGGC 165 495 111 Antisense
TGGCTACGGAGGCCGCGGTGGAGAA 63 545 123 Antisense
AAGGCAGAAGCTTCGGCGGACAAAA 218 161 146 Antisense
AAAGTGCTACAATTGCGGACGCTCC 614 121 168 Antisense
GAGTGCACCGAGAGTGGCTCGGCCG 48 401 208 Antisense
GGCCGAGGAGAAGCGTTGCTACCAG 255 543 228 Antisense
TTGCTACCAGTGCCAGGAGACCGGA 282 667 243 Antisense
TGCCAGGAGACCGGACACATCTCCC 652 585 253 Antisense
Sequence Source Affymetrix Proprietary Database