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[173239_s_at] ubiquinol-cytochrome c reductase complex core protein 2

Description CEC188_rc /REP_DB=TREMBL Accession /GB=C08188 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk184a1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 23      6grp_high1_10_10 > 21      4grp_highest_8_8 > 16      4grp_high_8_8 > 60      6grp_highest_nonorm > 24      6grp_total > 32      4grp_total > 59      6grp_highest_sub > 01_02_03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3620
1 2 3 4 range
A 3653.4
(1.4)
P 		4463.9
(2.8)
P 		4600.3
(3)
P 		988
(-3)
P 		3612
B 3613.4
(1.3)
P 		4036.3
(2)
P 		4608.4
(3)
P 		1133.5
(-3)
P 		3475
C 3456
(1.6)
P 		3877.9
(2.4)
P 		4152.2
(3)
P 		1188.8
(-3)
P 		2963
avr 3574.3
(1.4) 		4126
(2.4) 		4453.6
(3) 		1103.4
(-3) 		3350

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2711
1 2 3 4 5 6 range
A 3253.7
(1.7)
P 		3488.1
(2.4)
P 		3725.9
(3)
P 		2593.8
(-0.1)
P 		2316.2
(-0.8)
P 		1506.9
(-3)
P 		2219
B 3653.8
(1.7)
P 		3709.4
(1.8)
P 		4217.8
(3)
P 		3175
(0.6)
P 		2012.7
(-2.2)
P 		1663.2
(-3)
P 		2555
C 3075.7
(1)
P 		3532.1
(2.4)
P 		3739
(3)
P 		3022.2
(0.8)
P 		2342.1
(-1.3)
P 		1794.9
(-3)
P 		1944
avr 3327.7
(1.5) 		3576.5
(2.1) 		3894.2
(3) 		2930.3
(0.4) 		2223.7
(-1.5) 		1655
(-3) 		2239
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1303
1 2 3 4 range
A 1330.2
(3)
P 		969
(1.2)
P 		1202.6
(2.4)
P 		144.6
(-3)
P 		1186
B 1152.3
(3)
P 		996.9
(2)
P 		1067.9
(2.4)
P 		241.5
(-3)
P 		911
C 1144
(1.5)
P 		1114.9
(1.4)
P 		1447.2
(3)
P 		200.4
(-3)
P 		1247
avr 1208.8
(2.8) 		1026.9
(1.8) 		1239.2
(3) 		195.5
(-3) 		1044

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 904
1 2 3 4 5 6 range
A 599.8
(-1.4)
P 		1240.5
(3)
P 		811.4
(0.1)
P 		657.9
(-1)
P 		698.9
(-0.7)
P 		366.9
(-3)
P 		874
B 1271.3
(3)
P 		1234.7
(2.7)
P 		1024.2
(0.7)
P 		841
(-1)
P 		817.7
(-1.2)
P 		620.2
(-3)
P 		651
C 1140
(3)
P 		1077.7
(2.3)
P 		951.7
(0.9)
P 		607.8
(-2.9)
P 		757.9
(-1.3)
P 		600.9
(-3)
P 		539
avr 1003.7
(1.3) 		1184.3
(3) 		929.1
(0.7) 		702.2
(-1.4) 		758.2
(-0.9) 		529.3
(-3) 		655
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173239_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27963
Sequence Type Exemplar sequence
Representative Public ID CEC188 NCBI
Target Description CEC188_rc /REP_DB=TREMBL Accession /GB=C08188 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk184a1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078120(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078120 NCBI Caenorhabditis elegans T10B10.2 (T10B10.2) mRNA, complete cds. 11/11 A 
SNAP00000009611 ENSEMBL cdna:SNAP chromosome:CEL140:X:15173821:15177893:1 11/11 None
GENEFINDER00000009624 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15176769:15177893:1 11/11 None
T10B10.2 ENSEMBL cdna:known chromosome:CEL140:X:15173820:15178042:1 gene:T10B10.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15177118-15177943(+) 100.0 100.0
Public Domain and Genome References
Gene Title ubiquinol-cytochrome c reductase complex core protein 2
Ensembl T10B10.2
Entrez Gene 181611 Entrez gene
SwissProt Q22370 EMBL-EBI
WormBase CE23962 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1604159_AT similar to Ubiquinol-cytochrome-c reductase complex core protein 2, mitochondrial precursor (Complex III subunit II) cfa
CANINE:1595741_X_AT similar to Ubiquinol-cytochrome-c reductase complex core protein 2, mitochondrial precursor (Complex III subunit II) cfa
CANINE_2:CFA.1425.1.S1_AT similar to Ubiquinol-cytochrome-c reductase complex core protein 2, mitochondrial precursor (Complex III subunit II) cfa
CANINE_2:CFA.1425.1.S1_S_AT similar to Ubiquinol-cytochrome-c reductase complex core protein 2, mitochondrial precursor (Complex III subunit II) cfa
CANINE_2:CFA.1425.3.S1_AT similar to Ubiquinol-cytochrome-c reductase complex core protein 2, mitochondrial precursor (Complex III subunit II) cfa
CANINE_2:CFAAFFX.25239.1.S1_S_AT similar to Ubiquinol-cytochrome-c reductase complex core protein 2, mitochondrial precursor (Complex III subunit II) cfa
DROSOPHILA_2:1624439_AT dm
DROSGENOME1:148901_AT dm
CHICKEN:GGA.1021.1.S1_AT similar to Ubiquinol-cytochrome C reductase complex core protein 2, mitochondrial precursor (Complex III subunit II) gga
CHICKEN:GGAAFFX.1657.1.S1_AT similar to Ubiquinol-cytochrome C reductase complex core protein 2, mitochondrial precursor (Complex III subunit II) gga
HG-U133_PLUS_2:200883_AT ubiquinol-cytochrome c reductase core protein II hs
HG-U133A_2:200883_AT ubiquinol-cytochrome c reductase core protein II hs
HG-U133A:200883_AT ubiquinol-cytochrome c reductase core protein II hs
HUGENEFL:J04973_AT ubiquinol-cytochrome c reductase core protein II hs
U133_X3P:HS.173554.1.A1_3P_A_AT ubiquinol-cytochrome c reductase core protein II hs
HG-U133A_2:212600_S_AT ubiquinol-cytochrome c reductase core protein II hs
HG-FOCUS:212600_S_AT ubiquinol-cytochrome c reductase core protein II hs
HG-U133_PLUS_2:212600_S_AT ubiquinol-cytochrome c reductase core protein II hs
HG-U133A:212600_S_AT ubiquinol-cytochrome c reductase core protein II hs
HG-U95AV2:40854_AT ubiquinol-cytochrome c reductase core protein II hs
HG-U133_PLUS_2:241755_AT Ubiquinol-cytochrome c reductase core protein II hs
HG-U133B:241755_AT Ubiquinol-cytochrome c reductase core protein II hs
U133_X3P:HS.265591.1.A1_3P_AT Ubiquinol-cytochrome c reductase core protein II hs
HG-U133_PLUS_2:239465_AT Ubiquinol-cytochrome c reductase core protein II hs
HG-U133B:239465_AT Ubiquinol-cytochrome c reductase core protein II hs
HG-U95B:43661_AT Ubiquinol-cytochrome c reductase core protein II hs
HU35KSUBB:RC_R44647_AT Ubiquinol-cytochrome c reductase core protein II hs
U133_X3P:HS.265591.0.S1_3P_AT Ubiquinol-cytochrome c reductase core protein II hs
MU11KSUBA:AA667872_S_AT ubiquinol cytochrome c reductase core protein 2 mm
MG-U74AV2:102000_F_AT ubiquinol cytochrome c reductase core protein 2 mm
MOE430A:1428631_A_AT ubiquinol cytochrome c reductase core protein 2 mm
MOUSE430A_2:1428631_A_AT ubiquinol cytochrome c reductase core protein 2 mm
MOUSE430_2:1428631_A_AT ubiquinol cytochrome c reductase core protein 2 mm
MOE430A:1431741_A_AT ubiquinol cytochrome c reductase core protein 2 mm
MOUSE430A_2:1431741_A_AT ubiquinol cytochrome c reductase core protein 2 mm
MOUSE430_2:1431741_A_AT ubiquinol cytochrome c reductase core protein 2 mm
MOE430A:1435757_A_AT ubiquinol cytochrome c reductase core protein 2 mm
MOUSE430A_2:1435757_A_AT ubiquinol cytochrome c reductase core protein 2 mm
MOUSE430_2:1435757_A_AT ubiquinol cytochrome c reductase core protein 2 mm
MU19KSUBC:TC41043_AT Ubiquinol cytochrome c reductase core protein 2 (Uqcrc2), mRNA mm
MU19KSUBC:TC41555_AT Ubiquinol cytochrome c reductase core protein 2 (Uqcrc2), mRNA mm
RT-U34:RC_AI235358_AT ubiquinol-cytochrome c reductase core protein II rn
RG-U34A:RC_AI235358_AT ubiquinol-cytochrome c reductase core protein II rn
RG-U34C:RC_AI233114_AT ubiquinol-cytochrome c reductase core protein II rn
RAE230A:1373362_AT ubiquinol-cytochrome c reductase core protein II rn
RAT230_2:1373362_AT ubiquinol-cytochrome c reductase core protein II rn
RAE230B:1382280_AT ubiquinol-cytochrome c reductase core protein II rn
RAT230_2:1382280_AT ubiquinol-cytochrome c reductase core protein II rn
RAE230B:1381176_AT Similar to hypothetical protein MGC50721 rn
RAT230_2:1381176_AT Similar to hypothetical protein MGC50721 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4222 metalloendopeptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA96675 Hypothetical protein T10B10.2 [Caenorhabditis elegans] ref|NP_510521.1| T10B10.2 [Caenorhabditis elegans] 0.0
blast CAE63249 Hypothetical protein CBG07617 [Caenorhabditis briggsae] 1.0E-158
blast CAA96675 Hypothetical protein T10B10.2 [Caenorhabditis elegans] ref|NP_510521.1| T10B10.2 [Caenorhabditis elegans] 6.0E-88
blast AAC68920 Hypothetical protein T24C4.1 [Caenorhabditis elegans] ref|NP_497284.1| T24C4.1 [Caenorhabditis elegans] 4.0E-75
Protein Domains
Database ID Description E-Value
Pfam IPR007863 EMBL-EBI Peptidase M16, C-terminal 1.9E-15
Pfam IPR001431 EMBL-EBI Peptidase M16, insulinase-like 2.9E-9
Pfam IPR007863 EMBL-EBI Peptidase M16, C-terminal 1.3E-10
Sequence
Target Sequence 
>C. ELEGANS:173239_S_AT
gaaggtcgctgatattgaagccgtcaagaagcaggccttcaacaacgccttgagagcctc
tgctcattccgacaactttgccatcgagagagcctcccaactcttccagtcccaagacnn
nnnnnnnnnnnnnnnnncaaatgtgtcggctagtgatgttgaagttgccgccaagaaatt
gactaccaagttgtcgttggccagttatggaaatgtctcagaagtcccatatgttgatac
tctgtga

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGGTCGCTGATATTGAAGCCGTC 364 333 25 Antisense
AAGCCGTCAAGAAGCAGGCCTTCAA 619 147 42 Antisense
AAGCAGGCCTTCAACAACGCCTTGA 112 151 53 Antisense
TTCAACAACGCCTTGAGAGCCTCTG 187 685 62 Antisense
CTCATTCCGACAACTTTGCCATCGA 319 229 87 Antisense
CAACTTTGCCATCGAGAGAGCCTCC 148 189 97 Antisense
GCTAGTGATGTTGAAGTTGCCGCCA 296 303 173 Antisense
GTTGCCGCCAAGAAATTGACTACCA 595 439 188 Antisense
GACTACCAAGTTGTCGTTGGCCAGT 54 367 205 Antisense
GGAAATGTCTCAGAAGTCCCATATG 508 527 233 Antisense
AGTCCCATATGTTGATACTCTGTGA 128 61 247 Antisense
Sequence Source Affymetrix Proprietary Database