[Home] | [Total List]

[173238_s_at] acetyltransferase

Description C51398_rc /REP_DB=TREMBL Accession /GB=C51398 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk195b3 : 3prime end, single read.
Cluster 4grp_highest_8_8 > 26      4grp_high_8_8 > 59      6grp_total > 57      4grp_total > 60      6grp_cgc > 38      6grp_cgc_sub > Da      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1741
1 2 3 4 range
A 1238.5
(0.8)
P 		976.5
(-0.5)
P 		1709.5
(3)
P 		440.8
(-3)
P 		1269
B 1205.8
(0.6)
P 		1025.2
(-0.4)
P 		1673.6
(3)
P 		514.9
(-3)
P 		1159
C 1259.7
(0.2)
P 		1120.1
(-0.3)
P 		2067.8
(3)
P 		327.1
(-3)
P 		1741
avr 1234.7
(0.5) 		1040.6
(-0.4) 		1817
(3) 		427.6
(-3) 		1389

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 481
1 2 3 4 5 6 range
A 161.3
(-1)
P 		109.7
(-1.8)
P 		158.8
(-1.1)
P 		82.7
(-2.2)
A 		27.1
(-3)
A 		434.5
(3)
P 		407
B 224
(-0.7)
P 		89.3
(-2.6)
P 		118.5
(-2.2)
P 		79.8
(-2.7)
A 		59.6
(-3)
P 		490.5
(3)
P 		431
C 180.6
(-0.1)
P 		113.6
(-1.3)
P 		105.4
(-1.4)
P 		9.9
(-3)
A 		50.8
(-2.3)
P 		365.5
(3)
P 		356
avr 188.6
(-0.8) 		104.2
(-2.1) 		127.6
(-1.7) 		57.5
(-2.8) 		45.8
(-3) 		430.2
(3) 		384
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 666
1 2 3 4 range
A 450.9
(3)
P 		212
(-0.7)
P 		446.9
(2.9)
P 		64.5
(-3)
P 		386
B 384.5
(2.9)
P 		253.2
(0.1)
P 		387.8
(3)
P 		109.7
(-3)
P 		278
C 417
(0.3)
P 		322
(-0.6)
P 		720.7
(3)
P 		55.1
(-3)
P 		666
avr 417.5
(1.6) 		262.4
(-0.5) 		518.5
(3) 		76.4
(-3) 		442

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 181
1 2 3 4 5 6 range
A 29.7
(-1.7)
P 		39
(-1.1)
P 		34.6
(-1.4)
P 		21
(-2.2)
A 		8.2
(-3)
A 		105.8
(3)
P 		98
B 77.9
(-0.9)
P 		29.7
(-2.7)
P 		28.8
(-2.7)
P 		21.1
(-3)
A 		24.2
(-2.9)
P 		182.9
(3)
P 		162
C 66.9
(0.2)
P 		34.7
(-1.4)
P 		26.8
(-1.8)
P 		2
(-3)
A 		16.4
(-2.3)
P 		122.4
(3)
P 		120
avr 58.2
(-0.9) 		34.5
(-2) 		30.1
(-2.2) 		14.7
(-3) 		16.3
(-2.9) 		137
(3) 		122
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173238_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27716
Sequence Type Exemplar sequence
Representative Public ID C51398 NCBI
Target Description C51398_rc /REP_DB=TREMBL Accession /GB=C51398 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk195b3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071947(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071947 NCBI Caenorhabditis elegans K11D12.4 (acetyltransferase) mRNA, complete cds. 11/11 A 
SNAP00000023421 ENSEMBL cdna:SNAP chromosome:CEL140:V:5023588:5027529:-1 11/11 None
GENEFINDER00000023436 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5023588:5027529:-1 11/11 None
K11D12.4 ENSEMBL cdna:known chromosome:CEL140:V:5023519:5027534:-1 gene:K11D12.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5023585-5023737(-) 68.02 68.02
Public Domain and Genome References
Gene Title acetyltransferase
Gene Symbol cpt-4
Ensembl K11D12.4
Entrez Gene 178889 Entrez gene
SwissProt O44619 EMBL-EBI
WormBase CE12132 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4197 cysteine-type endopeptidase activity inferred from electronic annotation QuickGO AmiGO
8415 acyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_504348 K11D12.4 [Caenorhabditis elegans] gb|AAB94222.1| Hypothetical protein K11D12.4 [Caenorhabditis elegans] 0.0
blast CAE64048 Hypothetical protein CBG08646 [Caenorhabditis briggsae] 0.0
blast CAB03394 Hypothetical protein F09F3.9 [Caenorhabditis elegans] emb|CAB02911.3| Hypothetical protein F09F3.9 [Caenorhabditis elegans] ref|NP_741637.1| F09F3.9 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000542 EMBL-EBI Acyltransferase ChoActase/COT/CPT 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:173238_S_AT
ataatggttcacatcacttcctaccactcatctccagcaactgattctgataggtttggt
caacatttgcgtgaagcaattcatacacttgccgatttgttcgacgatgagccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATAATGGTTCACATCACTTCCTACC 66 25 89 Antisense
TAATGGTTCACATCACTTCCTACCA 321 637 90 Antisense
ACCACTCATCTCCAGCAACTGATTC 438 85 111 Antisense
TCATCTCCAGCAACTGATTCTGATA 191 621 116 Antisense
GCAACTGATTCTGATAGGTTTGGTC 234 319 125 Antisense
GATAGGTTTGGTCAACATTTGCGTG 225 425 137 Antisense
GTTTGGTCAACATTTGCGTGAAGCA 417 451 142 Antisense
GCGTGAAGCAATTCATACACTTGCC 67 293 157 Antisense
AATTCATACACTTGCCGATTTGTTC 585 175 166 Antisense
TACACTTGCCGATTTGTTCGACGAT 175 643 172 Antisense
GCCGATTTGTTCGACGATGAGCCAA 647 283 179 Antisense
Sequence Source Affymetrix Proprietary Database