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[173236_at]

Description C56588_rc /REP_DB=TREMBL Accession /GB=C56588 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk264c3 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 88      6grp_high1_10_10 > 98      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 92      6grp_total > 96      4grp_total > 02      6grp_highest_sub > Da      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 290
1 2 3 4 range
A 232.4
(-1.8)
P 		249.6
(-1.3)
P 		188.5
(-3)
P 		409.1
(3)
P 		221
B 185.4
(-2.9)
P 		190.8
(-2.8)
P 		180.9
(-3)
P 		471.1
(3)
P 		290
C 243.3
(-1.1)
P 		194.2
(-3)
P 		257.6
(-0.5)
P 		348.4
(3)
P 		154
avr 220.4
(-2.7) 		211.5
(-2.9) 		209
(-3) 		409.5
(3) 		201

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 314
1 2 3 4 5 6 range
A 242.8
(-2.4)
P 		220.8
(-3)
P 		229.1
(-2.8)
P 		338.5
(0.3)
P 		364.6
(1)
P 		433.9
(3)
P 		213
B 268.9
(-1.4)
P 		186.5
(-3)
P 		259.3
(-1.6)
P 		255.7
(-1.7)
P 		397.6
(1)
P 		500.8
(3)
P 		314
C 239.8
(-2)
P 		186.5
(-3)
P 		255.5
(-1.7)
P 		304.1
(-0.7)
P 		378.4
(0.8)
P 		493.4
(3)
P 		307
avr 250.5
(-1.9) 		197.9
(-3) 		248
(-1.9) 		299.4
(-0.8) 		380.2
(0.9) 		476
(3) 		278
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 84.6
(3)
P 		54.2
(-2.2)
P 		49.3
(-3)
P 		59.9
(-1.2)
P 		35
B 59.1
(-1.2)
P 		47.1
(-2.5)
P 		41.9
(-3)
P 		100.4
(3)
P 		59
C 80.5
(1.4)
P 		55.8
(-3)
P 		89.8
(3)
P 		58.7
(-2.5)
P 		34
avr 74.7
(3) 		52.4
(-3) 		60.3
(-0.9) 		73
(2.5) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 142
1 2 3 4 5 6 range
A 44.8
(-3)
P 		78.5
(0.1)
P 		49.9
(-2.5)
P 		85.8
(0.8)
P 		110
(3)
P 		105.6
(2.6)
P 		65
B 93.6
(-1.5)
P 		62.1
(-3)
P 		63
(-3)
P 		67.7
(-2.7)
P 		161.6
(1.8)
P 		186.7
(3)
P 		125
C 88.9
(-1.2)
P 		56.9
(-3)
P 		65
(-2.6)
P 		61.2
(-2.8)
P 		122.4
(0.6)
P 		165.2
(3)
P 		108
avr 75.8
(-1.9) 		65.8
(-2.6) 		59.3
(-3) 		71.6
(-2.2) 		131.3
(1.6) 		152.5
(3) 		93
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173236_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27660
Sequence Type Exemplar sequence
Representative Public ID C56588 NCBI
Target Description C56588_rc /REP_DB=TREMBL Accession /GB=C56588 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk264c3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070153(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070153 NCBI Caenorhabditis elegans Y67H2A.2 (Y67H2A.2) mRNA, complete cds. 11/11 None
GENEFINDER00000010794 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13289816:13293469:-1 11/11 None
Y67H2A.2 ENSEMBL cdna:known chromosome:CEL140:IV:13289767:13297828:-1 gene:Y67H2A.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000010780 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title
Ensembl Y67H2A.2
Entrez Gene 178286 Entrez gene
SwissProt Q95PZ3 EMBL-EBI
WormBase CE32994 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC44304 Hypothetical protein Y67H2A.2 [Caenorhabditis elegans] ref|NP_502554.2| Y67H2A.2 [Caenorhabditis elegans] 0.0
blast CAE58628 Hypothetical protein CBG01796 [Caenorhabditis briggsae] 1.0E-128
blast CAC44304 Hypothetical protein Y67H2A.2 [Caenorhabditis elegans] ref|NP_502554.2| Y67H2A.2 [Caenorhabditis elegans] 1.0E-103
blast CAE58628 Hypothetical protein CBG01796 [Caenorhabditis briggsae] 4.0E-40
blast XP_425257 PREDICTED: similar to KIAA0265 protein [Gallus gallus] 1.0E-30
Protein Domains
Database ID Description E-Value
Pfam IPR006652 EMBL-EBI Kelch repeat 7.9E-5
Pfam IPR006652 EMBL-EBI Kelch repeat 1.0E-4
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000010794 2 94-116,137-159
Sequence
Target Sequence 
>C. ELEGANS:173236_AT
tcagccagaacaagagcctgccagacgtcgacntagggtccaaatcagacaacgcccaca
agtcaatatagaggcagctgcaccaattggaaatattcaacgtcgacttcagctaannnn
ngatcaacttttcgcgggcgatgaaggcgccgt

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAGCCAGAACAAGAGCCTGCCAGA 113 625 13 Antisense
CAGAACAAGAGCCTGCCAGACGTCG 643 189 18 Antisense
AGGGTCCAAATCAGACAACGCCCAC 619 51 47 Antisense
AAATCAGACAACGCCCACAAGTCAA 285 115 54 Antisense
ACAACGCCCACAAGTCAATATAGAG 684 111 61 Antisense
AGTCAATATAGAGGCAGCTGCACCA 591 61 73 Antisense
AGAGGCAGCTGCACCAATTGGAAAT 430 65 82 Antisense
GGAAATATTCAACGTCGACTTCAGC 258 527 101 Antisense
AATATTCAACGTCGACTTCAGCTAA 95 175 104 Antisense
GATCAACTTTTCGCGGGCGATGAAG 404 419 134 Antisense
TTTTCGCGGGCGATGAAGGCGCCGT 659 613 141 Antisense
Sequence Source Affymetrix Proprietary Database