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[173233_s_at]

Description C37848_rc /REP_DB=TREMBL Accession /GB=C37848 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk479g1 : 3prime end, single read.
Cluster 6grp_total > 77      4grp_total > 01      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 1.4
(-3)
A 		6.9
(-1.6)
A 		17.4
(1.2)
A 		24.2
(3)
A 		23
B 16.3
(0.2)
A 		5.3
(-2.6)
A 		3.7
(-3)
A 		27
(3)
A 		23
C 3.9
(-3)
A 		6.4
(-2.6)
A 		7.2
(-2.5)
A 		44.5
(3)
A 		41
avr 7.2
(-2.8) 		6.2
(-3) 		9.4
(-2.3) 		31.9
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 103
1 2 3 4 5 6 range
A 6.3
(-2.8)
A 		3.5
(-3)
A 		6.9
(-2.8)
A 		8.1
(-2.7)
A 		46.7
(-0.4)
P 		104.7
(3)
P 		101
B 8.5
(-2.8)
A 		25.6
(-1.6)
A 		19.9
(-2)
A 		5.2
(-3)
A 		36
(-0.9)
P 		92.7
(3)
P 		88
C 2.8
(-2.9)
A 		1.3
(-3)
A 		30.6
(-1.2)
A 		5.4
(-2.7)
A 		21.5
(-1.7)
A 		97.6
(3)
P 		96
avr 5.9
(-3) 		10.1
(-2.7) 		19.1
(-2.1) 		6.2
(-3) 		34.7
(-1.1) 		98.3
(3) 		92
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 0.5
(-3)
A 		1.5
(-1.5)
A 		4.5
(3)
A 		3.5
(1.5)
A 		4
B 5.2
(2.4)
A 		1.3
(-2.5)
A 		0.9
(-3)
A 		5.7
(3)
A 		5
C 1.3
(-3)
A 		1.8
(-2.5)
A 		2.5
(-1.8)
A 		7.5
(3)
A 		6
avr 2.3
(-1.8) 		1.5
(-3) 		2.6
(-1.4) 		5.6
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 1.2
(-3)
A 		1.2
(-3)
A 		1.5
(-2.9)
A 		2
(-2.8)
A 		14.1
(0.2)
P 		25.5
(3)
P 		24
B 2.9
(-2.7)
A 		8.5
(-1.7)
A 		4.8
(-2.4)
A 		1.4
(-3)
A 		14.6
(-0.6)
P 		34.6
(3)
P 		33
C 1.1
(-2.9)
A 		0.4
(-3)
A 		7.8
(-1.6)
A 		1.1
(-2.9)
A 		7
(-1.8)
A 		32.7
(3)
P 		32
avr 1.7
(-3) 		3.4
(-2.6) 		4.7
(-2.3) 		1.5
(-3) 		11.9
(-0.9) 		30.9
(3) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173233_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27894
Sequence Type Exemplar sequence
Representative Public ID C37848 NCBI
Target Description C37848_rc /REP_DB=TREMBL Accession /GB=C37848 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk479g1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070560(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070560 NCBI Caenorhabditis elegans Y51H4A.4 (Y51H4A.4) mRNA, complete cds. 11/11 A 
SNAP00000000178 ENSEMBL cdna:SNAP chromosome:CEL140:IV:16503413:16505626:-1 11/11 None
GENEFINDER00000000215 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16503413:16505629:-1 11/11 None
Y51H4A.4 ENSEMBL cdna:known chromosome:CEL140:IV:16503318:16505642:-1 gene:Y51H4A.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:16503323-16504161(-) 88.36 88.36
Public Domain and Genome References
Gene Title
Ensembl Y51H4A.4
Entrez Gene 178459 Entrez gene
SwissProt Q9NAE4 EMBL-EBI
WormBase CE22330 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB61136 Hypothetical protein Y51H4A.4 [Caenorhabditis elegans] ref|NP_502961.1| Y51H4A.4 [Caenorhabditis elegans] 4.0E-86
blast CAB61136 Hypothetical protein Y51H4A.4 [Caenorhabditis elegans] ref|NP_502961.1| Y51H4A.4 [Caenorhabditis elegans] 2.0E-85
blast CAE68044 Hypothetical protein CBG13661 [Caenorhabditis briggsae] 3.0E-37
blast CAE68044 Hypothetical protein CBG13661 [Caenorhabditis briggsae] 8.0E-37
blast CAF97913 unnamed protein product [Tetraodon nigroviridis] 2.0E-10
Sequence
Target Sequence 
>C. ELEGANS:173233_S_AT
agtcgatcaggacaatagtgttcgtgtaacatatttggagagggaaaatcaatgcttgcg
agtttacgtccaacagctccaantacaaaacggatcgatgagacaacatttgctcctgca
aaatccgggcactatagacactatggacccgattgccatggcgaatatgccgagttatt

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTCGATCAGGACAATAGTGTTCGT 149 59 36 Antisense
TCAGGACAATAGTGTTCGTGTAACA 403 607 42 Antisense
GTTCGTGTAACATATTTGGAGAGGG 364 441 55 Antisense
GGAGAGGGAAAATCAATGCTTGCGA 225 519 72 Antisense
GATGAGACAACATTTGCTCCTGCAA 550 411 132 Antisense
TTGCTCCTGCAAAATCCGGGCACTA 689 701 145 Antisense
AAATCCGGGCACTATAGACACTATG 619 115 156 Antisense
TATAGACACTATGGACCCGATTGCC 121 659 168 Antisense
GACACTATGGACCCGATTGCCATGG 655 365 172 Antisense
TATGGACCCGATTGCCATGGCGAAT 238 655 177 Antisense
GCCATGGCGAATATGCCGAGTTATT 217 281 190 Antisense
Sequence Source Affymetrix Proprietary Database