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[173228_at]

Description C56848_rc /REP_DB=TREMBL Accession /GB=C56848 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk278f5 : 3prime end, single read.
Cluster 6grp_total > 97      4grp_total > 11      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 7.8
(-3)
A 		30.7
(-1.3)
A 		10.5
(-2.8)
A 		89.7
(3)
P 		82
B 12.9
(-1.9)
A 		9
(-2.3)
A 		3.6
(-3)
A 		52.8
(3)
P 		49
C 37.2
(0.2)
A 		3.1
(-3)
A 		5.6
(-2.8)
A 		67
(3)
P 		64
avr 19.3
(-1.8) 		14.3
(-2.3) 		6.6
(-3) 		69.8
(3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 89
1 2 3 4 5 6 range
A 21.3
(-0.4)
A 		8.4
(-2.6)
A 		15.6
(-1.4)
A 		6.3
(-3)
A 		40.4
(3)
P 		39.1
(2.8)
A 		34
B 8.5
(-3)
A 		15
(-2.5)
A 		10.9
(-2.8)
A 		33.6
(-1)
A 		71.1
(2.1)
A 		82.4
(3)
P 		74
C 4.1
(-2.9)
A 		7.5
(-2.7)
A 		2.7
(-3)
A 		24
(-1.6)
A 		27.6
(-1.3)
A 		91.2
(3)
P 		89
avr 11.3
(-2.8) 		10.3
(-2.9) 		9.7
(-3) 		21.3
(-1.9) 		46.4
(0.6) 		70.9
(3) 		61
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 2.9
(-2.9)
A 		6.7
(-0.7)
A 		2.8
(-3)
A 		13.1
(3)
P 		10
B 4.1
(-1.1)
A 		2.2
(-2.2)
A 		0.8
(-3)
A 		11.2
(3)
P 		10
C 12.3
(3)
A 		0.9
(-3)
A 		1.9
(-2.5)
A 		11.3
(2.5)
P 		11
avr 6.4
(-0.3) 		3.3
(-2.1) 		1.8
(-3) 		11.9
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 3.9
(-1.7)
A 		3
(-2.2)
A 		3.4
(-2)
A 		1.6
(-3)
A 		12.2
(3)
P 		9.5
(1.5)
A 		11
B 3
(-2.9)
A 		5
(-2.5)
A 		2.7
(-3)
A 		8.9
(-1.7)
A 		28.9
(2.6)
A 		30.7
(3)
P 		28
C 1.5
(-2.8)
A 		2.3
(-2.7)
A 		0.7
(-3)
A 		4.8
(-2.2)
A 		8.9
(-1.3)
A 		30.5
(3)
P 		30
avr 2.8
(-2.9) 		3.4
(-2.7) 		2.3
(-3) 		5.1
(-2.2) 		16.7
(1.1) 		23.6
(3) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173228_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27913
Sequence Type Exemplar sequence
Representative Public ID C56848 NCBI
Target Description C56848_rc /REP_DB=TREMBL Accession /GB=C56848 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk278f5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071065
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071065 NCBI Caenorhabditis elegans Y46H3D.1 (Y46H3D.1) mRNA, complete cds. A 
GENEFINDER00000018940 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1642385:1642847:1 None
Y46H3D.1 ENSEMBL cdna:known chromosome:CEL140:V:1642340:1642951:1 gene:Y46H3D.1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1642339-1642875(+) 71.07 71.07
Public Domain and Genome References
Gene Title
Ensembl Y46H3D.1
Entrez Gene 178652 Entrez gene
SwissProt Q966B2 EMBL-EBI
WormBase CE24318 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503466 Y46H3D.1 [Caenorhabditis elegans] gb|AAK72304.1| Hypothetical protein Y46H3D.1 [Caenorhabditis elegans] 8.0E-12
Sequence
Target Sequence 
>C. ELEGANS:173228_AT
gtttgatcgattgagttccgaacacgatgcttcaatactttattcttggttatctagtat
ttgagatcctccgtctcgcccaactccccgacgtctgtgcggtcaaattcacgccaccgc
ccgccaagcaggatacannnccaccagctgcagtcccggctccagaagccccgaagtccg
aagttagtaccgcaaagtccggatagagcaatggtcattgccaagtgtcgtctaaag

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTGATCGATTGAGTTCCGAACAC 199 451 32 Antisense
TGAGTTCCGAACACGATGCTTCAAT 520 551 43 Antisense
GTTCCGAACACGATGCTTCAATACT 562 441 46 Antisense
AACACGATGCTTCAATACTTTATTC 84 137 52 Antisense
TCAATACTTTATTCTTGGTTATCTA 551 633 63 Antisense
TATTCTTGGTTATCTAGTATTTGAG 464 661 72 Antisense
CTAGTATTTGAGATCCTCCGTCTCG 73 225 85 Antisense
GAAGTTAGTACCGCAAAGTCCGGAT 375 333 211 Antisense
AAGTCCGGATAGAGCAATGGTCATT 246 159 226 Antisense
AATGGTCATTGCCAAGTGTCGTCTA 322 163 241 Antisense
GGTCATTGCCAAGTGTCGTCTAAAG 451 503 244 Antisense
Sequence Source Affymetrix Proprietary Database