[Home] | [Total List]

[173225_at]

Description g2258470 /REP_DB=GenBank Identifier /FEA=mRNA Transcript
Cluster 6grp_highest_10_10 > 59      6grp_high1_10_10 > 94      4grp_highest_8_8 > 07      4grp_high_8_8 > 21      6grp_highest_nonorm > 91      6grp_total > 85      4grp_total > 17      6grp_highest_sub > In      6grp_cgc > 77      6grp_high1_sub > In      6grp_cgc_sub > 04_05_06      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 662
1 2 3 4 range
A 106.2
(-3)
P 		276.6
(-1.2)
P 		237.9
(-1.6)
P 		677.6
(3)
P 		571
B 121.4
(-3)
P 		305.5
(-0.9)
P 		215.5
(-1.9)
P 		654.7
(3)
P 		533
C 131.6
(-3)
P 		306.4
(-1.4)
P 		169.2
(-2.6)
P 		768.6
(3)
P 		637
avr 119.7
(-3) 		296.2
(-1.2) 		207.5
(-2.1) 		700.3
(3) 		581

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 244
1 2 3 4 5 6 range
A 96.8
(-3)
P 		180.1
(-1)
P 		154.3
(-1.6)
P 		219.5
(0)
P 		322.3
(2.5)
P 		341.1
(3)
P 		244
B 174.9
(-3)
P 		236.7
(1)
P 		195
(-1.7)
P 		267.1
(3)
P 		213.8
(-0.5)
P 		262.5
(2.7)
P 		92
C 185.1
(-3)
P 		235.1
(-0.8)
P 		227.9
(-1.1)
P 		321.3
(3)
P 		229.9
(-1)
P 		252.3
(-0)
P 		136
avr 152.3
(-3) 		217.3
(-0.1) 		192.4
(-1.2) 		269.3
(2.3) 		255.3
(1.6) 		285.3
(3) 		133
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 101
1 2 3 4 range
A 38.7
(-3)
P 		60
(-0.9)
P 		62.2
(-0.7)
P 		99.2
(3)
P 		61
B 38.7
(-3)
P 		75.4
(-0.8)
P 		49.9
(-2.3)
P 		139.5
(3)
P 		101
C 43.6
(-3)
P 		88.1
(0.1)
P 		59
(-1.9)
P 		129.6
(3)
P 		86
avr 40.3
(-3) 		74.5
(-0.5) 		57
(-1.8) 		122.8
(3) 		83

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 17.9
(-3)
P 		64.1
(0.5)
P 		33.6
(-1.8)
P 		55.7
(-0.1)
P 		97.3
(3)
P 		83
(1.9)
P 		79
B 60.8
(-1.4)
P 		78.8
(0.7)
P 		47.4
(-3)
P 		70.7
(-0.2)
P 		86.9
(1.7)
P 		97.9
(3)
P 		51
C 68.6
(-0.6)
P 		71.7
(0.1)
P 		58
(-3)
P 		64.6
(-1.5)
P 		74.4
(0.7)
P 		84.5
(3)
P 		27
avr 49.1
(-2.6) 		71.5
(0.6) 		46.3
(-3) 		63.7
(-0.5) 		86.2
(2.7) 		88.5
(3) 		42
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173225_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28082
Sequence Type Exemplar sequence
Representative Public ID 2258470 NCBI
Target Description g2258470 /REP_DB=GenBank Identifier /FEA=mRNA Transcript
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171223, NM_066748
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
T05G5.12 ENSEMBL cdna:known chromosome:CEL140:III:9735247:9735923:-1 gene:T05G5.12 None
T05G5.11 ENSEMBL cdna:known chromosome:CEL140:III:9735925:9736764:-1 gene:T05G5.11 None
NM_066748 NCBI Caenorhabditis elegans T05G5.11 (T05G5.11) mRNA, complete cds. None
NM_171223 NCBI Caenorhabditis elegans Dauer or Aging adult Overexpression family member (dao-6) (dao-6) mRNA, complete cds. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9735192-9736284(-) 93.12 93.12
Public Domain and Genome References
Gene Title

Gene Symbol dao-6
Ensembl T05G5.12
T05G5.11
Entrez Gene 176371 Entrez gene
3564991 Entrez gene
SwissProt Q95ZP9 EMBL-EBI
Q8MPY0 EMBL-EBI
WormBase CE28077 Wormbase
CE31363 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC42341 Hypothetical protein T05G5.11 [Caenorhabditis elegans] ref|NP_499149.3| T05G5.11 [Caenorhabditis elegans] 7.0E-61
blast AAB63300 paraquat-inducible protein [Caenorhabditis elegans] 7.0E-53
blast CAD44154 Hypothetical protein T05G5.12 [Caenorhabditis elegans] ref|NP_741265.1| Dauer or Aging adult Overexpression family member (dao-6) [Caenorhabditis elegans] 5.0E-20
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499149.3 1 38-60
T05G5.11 1 38-60
Sequence
Target Sequence 
>C. ELEGANS:173225_AT
tttccaaaacgtcattctctttccttttttctctctatttgaccatccttctacctatgt
ttgcctttttcatcatgtcctcccgttcctgtattcaatttccggtcttttaccgctcac
gtattttttcttctagtggtctactatggtatataaacaaggctcacgagctttatgctt
ctcatctgactgcaaactttggcaataatatttacatactcgttctgtgtcatttgaccg
tctgttgacatgtggaaaaagtcgcaattcacggcatataaaaaggtggagagcgatgaa
caagatagtgaaaaacaaaacactttcaattatcaaaagctatctgaatcagaaaccatg
ccagtccaccaaaaaacccgtaaaggttcaaaccattcaaatgcttcaactgcatcaacc
tgttcaactacttcatcttcaaagcgatatacctcttcacaacagtcatttgcctttgtg
ccgcccgtatttccggtcgtgccacagaaatttgtatttttcggataatcagctgctcaa
ggaacctctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCCAAAACGTCATTCTCTTTCCT 610 651 71 Antisense
TATGTTTGCCTTTTTCATCATGTCC 209 657 126 Antisense
TCAATTTCCGGTCTTTTACCGCTCA 705 571 165 Antisense
TACCGCTCACGTATTTTTTCTTCTA 145 649 181 Antisense
GCTCACGAGCTTTATGCTTCTCATC 589 301 232 Antisense
GCTTCTCATCTGACTGCAAACTTTG 217 305 247 Antisense
ATACTCGTTCTGTGTCATTTGACCG 474 23 286 Antisense
CTTCAACTGCATCAACCTGTTCAAC 467 221 474 Antisense
CCTGTTCAACTACTTCATCTTCAAA 162 267 489 Antisense
GATATACCTCTTCACAACAGTCATT 682 425 516 Antisense
TAATCAGCTGCTCAAGGAACCTCTT 279 633 596 Antisense
Sequence Source GenBank