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[173223_s_at] lectin

Description AV181476_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV181476 /DEF=Caenorhabditis elegans cDNA clone:yk620h12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 88      6grp_high1_10_10 > 88      6grp_highest_nonorm > 49      6grp_total > 98      4grp_total > 16      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 839
1 2 3 4 range
A 195
(-3)
A 		324.3
(-1.8)
P 		549
(0.2)
P 		851.8
(3)
P 		657
B 167.7
(-3)
M 		407.3
(-1.3)
P 		562.2
(-0.2)
P 		1007
(3)
P 		839
C 207.8
(-3)
A 		435.5
(-1)
P 		532.5
(-0.2)
P 		902.9
(3)
P 		695
avr 190.2
(-3) 		389
(-1.4) 		547.9
(-0.1) 		920.6
(3) 		730

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13281
1 2 3 4 5 6 range
A 518.5
(-2.9)
P 		256.3
(-3)
P 		738.1
(-2.8)
P 		1125.9
(-2.6)
P 		7998.1
(0.5)
P 		13527.1
(3)
P 		13271
B 498.5
(-2.9)
P 		245.9
(-3)
P 		831.3
(-2.7)
P 		1177.9
(-2.5)
P 		7233.4
(0.6)
P 		11997
(3)
P 		11751
C 462
(-2.9)
P 		269.2
(-3)
P 		766
(-2.7)
P 		1281
(-2.4)
P 		8137.6
(1.4)
P 		11046.6
(3)
P 		10777
avr 493
(-2.9) 		257.1
(-3) 		778.5
(-2.7) 		1194.9
(-2.5) 		7789.7
(0.8) 		12190.2
(3) 		11933
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 161
1 2 3 4 range
A 71
(-3)
A 		70.4
(-3)
P 		143.5
(3)
P 		124.7
(1.5)
P 		73
B 53.5
(-3)
M 		100.6
(-1.2)
P 		130.3
(-0.1)
P 		214.6
(3)
P 		161
C 68.8
(-3)
A 		125.2
(-0.1)
P 		185.6
(3)
P 		152.2
(1.3)
P 		117
avr 64.4
(-3) 		98.7
(-0.9) 		153.1
(2.4) 		163.8
(3) 		99

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4392
1 2 3 4 5 6 range
A 95.6
(-3)
P 		91.2
(-3)
P 		160.7
(-2.9)
P 		285.6
(-2.6)
P 		2413.5
(1.4)
P 		3293.4
(3)
P 		3202
B 173.5
(-2.9)
P 		81.9
(-3)
P 		201.9
(-2.8)
P 		312
(-2.7)
P 		2938.8
(0.9)
P 		4473.6
(3)
P 		4392
C 171.2
(-2.9)
P 		82.1
(-3)
P 		195
(-2.8)
P 		257.6
(-2.7)
P 		2633.2
(1.2)
P 		3697.9
(3)
P 		3616
avr 146.8
(-2.9) 		85.1
(-3) 		185.9
(-2.8) 		285.1
(-2.7) 		2661.8
(1.1) 		3821.6
(3) 		3737
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173223_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26738
Sequence Type Exemplar sequence
Representative Public ID AV181476 NCBI
Target Description AV181476_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV181476 /DEF=Caenorhabditis elegans cDNA clone:yk620h12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060281(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060281 NCBI Caenorhabditis elegans C25A1.8 (lectin) mRNA, complete cds. 11/11 A 
SNAP00000000657 ENSEMBL cdna:SNAP chromosome:CEL140:I:10192767:10193567:-1 11/11 None
GENEFINDER00000000673 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10192767:10193567:-1 11/11 None
C25A1.8 ENSEMBL cdna:known chromosome:CEL140:I:10192599:10193569:-1 gene:C25A1.8 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10192716-10192943(-) 59.33 59.33
Public Domain and Genome References
Gene Title lectin
Ensembl C25A1.8
Entrez Gene 172885 Entrez gene
SwissProt Q9XVS3 EMBL-EBI
WormBase CE08374 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02756 Hypothetical protein C25A1.8 [Caenorhabditis elegans] ref|NP_492682.1| C25A1.8 [Caenorhabditis elegans] 1.0E-138
blast CAE59878 Hypothetical protein CBG03358 [Caenorhabditis briggsae] 1.0E-107
blast AAO38621 Hypothetical protein K10B2.3a [Caenorhabditis elegans] ref|NP_495283.2| K10B2.3a [Caenorhabditis elegans] 9.0E-91
Sequence
Target Sequence 
>C. ELEGANS:173223_S_AT
ctcatcaaaccatacaagccactcttcaacggttggtcatcactcgccaattgtgctgcc
agctacaaatcaccatcatccctggaatcggcatcatacacgtacttctacccgtgcacg
tatatgctgtactccatttgtgaacgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCATCAAACCATACAAGCCACTCT 663 227 33 Antisense
AAGCCACTCTTCAACGGTTGGTCAT 89 149 48 Antisense
TTGGTCATCACTCGCCAATTGTGCT 206 705 65 Antisense
TGTGCTGCCAGCTACAAATCACCAT 612 555 84 Antisense
CAAATCACCATCATCCCTGGAATCG 591 193 98 Antisense
TCATCCCTGGAATCGGCATCATACA 520 619 108 Antisense
GAATCGGCATCATACACGTACTTCT 582 327 117 Antisense
TCATACACGTACTTCTACCCGTGCA 16 621 126 Antisense
ACTTCTACCCGTGCACGTATATGCT 345 103 136 Antisense
GTGCACGTATATGCTGTACTCCATT 432 481 146 Antisense
TATGCTGTACTCCATTTGTGAACGC 683 655 155 Antisense
Sequence Source Affymetrix Proprietary Database