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[173221_s_at] putative esterase

Description AV183412_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV183412 /DEF=Caenorhabditis elegans cDNA clone:yk651c12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 15      6grp_high1_10_10 > 40      4grp_highest_8_8 > 09      4grp_high_8_8 > 62      6grp_highest_nonorm > 42      6grp_total > 52      4grp_total > 58      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 821
1 2 3 4 range
A 562.6
(-1.4)
P 		1090.7
(2.7)
P 		1128.8
(3)
P 		364.9
(-3)
P 		764
B 607.3
(-0.7)
P 		973
(2)
P 		1100.1
(3)
P 		308.3
(-3)
P 		792
C 613.2
(-0.7)
P 		911.7
(1.7)
P 		1075.6
(3)
P 		316.6
(-3)
P 		759
avr 594.4
(-0.9) 		991.8
(2.1) 		1101.5
(3) 		329.9
(-3) 		772

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 789
1 2 3 4 5 6 range
A 662.9
(-1.3)
P 		704.7
(-1)
P 		1186.9
(3)
P 		884.1
(0.5)
P 		651.8
(-1.4)
P 		456
(-3)
P 		731
B 821.6
(-1.1)
P 		851.5
(-0.8)
P 		1244.5
(3)
P 		801.6
(-1.3)
P 		780.2
(-1.5)
P 		629.3
(-3)
P 		615
C 805
(0.7)
P 		806.9
(0.7)
P 		691.2
(-1.8)
P 		913.5
(3)
P 		635.5
(-3)
P 		681.8
(-2)
P 		278
avr 763.2
(-0.7) 		787.7
(-0.4) 		1040.9
(3) 		866.4
(0.7) 		689.2
(-1.7) 		589
(-3) 		452
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 322
1 2 3 4 range
A 204.9
(0.8)
P 		236.8
(1.6)
P 		295.1
(3)
P 		53.4
(-3)
P 		242
B 193.7
(1.1)
P 		240.3
(2.5)
P 		254.9
(3)
P 		65.7
(-3)
P 		189
C 203
(-0.2)
P 		262.1
(0.9)
P 		374.9
(3)
P 		53.4
(-3)
P 		322
avr 200.5
(0.4) 		246.4
(1.5) 		308.3
(3) 		57.5
(-3) 		251

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 206
1 2 3 4 5 6 range
A 122.2
(-2.5)
P 		250.6
(2.7)
P 		258.5
(3)
P 		224.2
(1.6)
P 		196.7
(0.5)
P 		111
(-3)
P 		148
B 285.9
(1.2)
P 		283.4
(1.1)
P 		302.2
(2.2)
P 		212.3
(-3)
P 		317
(3)
P 		234.7
(-1.7)
P 		105
C 298.4
(3)
P 		246.2
(0.4)
P 		175.9
(-3)
P 		183.7
(-2.6)
P 		205.6
(-1.5)
P 		228.2
(-0.4)
P 		123
avr 235.5
(0.9) 		260.1
(3) 		245.5
(1.7) 		206.7
(-1.7) 		239.8
(1.2) 		191.3
(-3) 		69
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173221_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26854
Sequence Type Exemplar sequence
Representative Public ID AV183412 NCBI
Target Description AV183412_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV183412 /DEF=Caenorhabditis elegans cDNA clone:yk651c12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060970(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060970 NCBI Caenorhabditis elegans Y48G10A.1 (Y48G10A.1) mRNA, complete cds. 11/11 A 
SNAP00000019580 ENSEMBL cdna:SNAP chromosome:CEL140:I:13498920:13499174:1 11/11 None
Y48G10A.1 ENSEMBL cdna:known chromosome:CEL140:I:13497706:13499345:1 gene:Y48G10A.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13498913-13499110(+) 82.08 82.08
Public Domain and Genome References
Gene Title putative esterase
Ensembl Y48G10A.1
Entrez Gene 173220 Entrez gene
SwissProt Q9TVN2 EMBL-EBI
WormBase CE25312 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:13655_AT esterase, putative at
ATH1-121501:245115_AT esterase, putative at
CANINE:1586430_AT similar to esterase D/formylglutathione hydrolase cfa
CANINE_2:CFA.11053.1.S1_AT similar to esterase D/formylglutathione hydrolase cfa
CANINE_2:CFAAFFX.7652.1.S1_S_AT similar to esterase D/formylglutathione hydrolase cfa
DROSOPHILA_2:1640351_S_AT dm
DROSGENOME1:151914_AT dm
HG-U133A:209009_AT esterase D/formylglutathione hydrolase hs
HG-U133_PLUS_2:209009_AT esterase D/formylglutathione hydrolase hs
HG-U133A_2:209009_AT esterase D/formylglutathione hydrolase hs
HG-U133_PLUS_2:215096_S_AT esterase D/formylglutathione hydrolase hs
HG-U133A_2:215096_S_AT esterase D/formylglutathione hydrolase hs
HG-U133A:215096_S_AT esterase D/formylglutathione hydrolase hs
HUGENEFL:M13450_AT esterase D/formylglutathione hydrolase hs
HUGENEFL:D28416_AT esterase D/formylglutathione hydrolase hs
U133_X3P:G12654662_3P_AT esterase D/formylglutathione hydrolase hs
U133_X3P:HS.82193.1.S1_3P_A_AT esterase D/formylglutathione hydrolase hs
U133_X3P:HS.129960.0.A1_3P_AT esterase D/formylglutathione hydrolase hs
HG-U133_PLUS_2:240808_AT esterase D/formylglutathione hydrolase hs
HG-U133B:240808_AT esterase D/formylglutathione hydrolase hs
HG-U95AV2:38375_AT esterase D/formylglutathione hydrolase hs
HG-U95D:77677_AT esterase D/formylglutathione hydrolase hs
HG-U133_PLUS_2:215095_AT Esterase D/formylglutathione hydrolase hs
HG-U133A_2:215095_AT Esterase D/formylglutathione hydrolase hs
HG-U133A:215095_AT Esterase D/formylglutathione hydrolase hs
HG-U133_PLUS_2:228162_AT Esterase D/formylglutathione hydrolase hs
HG-U133B:228162_AT Esterase D/formylglutathione hydrolase hs
HU35KSUBA:RC_AA281526_AT Esterase D/formylglutathione hydrolase hs
U133_X3P:HS.82193.1.S1_3P_X_AT Esterase D/formylglutathione hydrolase hs
U133_X3P:HS.32565.0.A1_3P_AT Esterase D/formylglutathione hydrolase hs
HG-U95B:44604_AT Esterase D/formylglutathione hydrolase hs
MG-U74AV2:92553_AT esterase D/formylglutathione hydrolase mm
MOE430A:1417825_AT esterase D/formylglutathione hydrolase mm
MOUSE430A_2:1417825_AT esterase D/formylglutathione hydrolase mm
MOUSE430_2:1417825_AT esterase D/formylglutathione hydrolase mm
MOE430B:1438488_AT esterase D/formylglutathione hydrolase mm
MOUSE430_2:1438488_AT esterase D/formylglutathione hydrolase mm
MOUSE430_2:1441604_AT Esterase D/formylglutathione hydrolase (Esd), mRNA mm
MOE430B:1441604_AT Esterase D/formylglutathione hydrolase (Esd), mRNA mm
MU19KSUBA:TC15679_AT Esterase D/formylglutathione hydrolase (Esd), mRNA mm
MU19KSUBB:TC31140_F_AT Esterase D/formylglutathione hydrolase (Esd), mRNA mm
MU19KSUBB:TC31141_F_AT Esterase D/formylglutathione hydrolase (Esd), mRNA mm
MU11KSUBB:W41971_AT Esterase D/formylglutathione hydrolase (Esd), mRNA mm
RG-U34B:RC_AA899045_G_AT Esterase D/formylglutathione hydrolase rn
RG-U34B:RC_AA899045_AT Esterase D/formylglutathione hydrolase rn
RG-U34C:RC_AI233204_AT Esterase D/formylglutathione hydrolase rn
RAE230A:1398903_AT Esterase D/formylglutathione hydrolase rn
RAT230_2:1398903_AT Esterase D/formylglutathione hydrolase rn
Protein Similarities
Method ID Description E-Value
blast CAB63414 Hypothetical protein Y48G10A.1 [Caenorhabditis elegans] emb|CAB60384.2| Hypothetical protein Y48G10A.1 [Caenorhabditis elegans] ref|NP_493371.1| Y48G10A.1 [Caenorhabditis elegans] 1.0E-162
blast CAE63539 Hypothetical protein CBG08020 [Caenorhabditis briggsae] 1.0E-139
blast NP_058599 esterase D/formylglutathione hydrolase [Mus musculus] gb|AAH46766.2| Esterase D/formylglutathione hydrolase [Mus musculus] dbj|BAC40154.1| unnamed protein product [Mus musculus] dbj|BAC37555.1| unnamed protein product [Mus musculus] dbj|BAB25090.1| unnamed protein product [Mus musculus] dbj|BAB32330.1| unnamed protein product [Mus musculus] sp|Q9R0P3|ESTD_MOUSE Esterase D (Esterase 10) (Sid 478) dbj|BAA84693.1| sid478p [Mus musculus] 3.0E-84
blast CAB63414 Hypothetical protein Y48G10A.1 [Caenorhabditis elegans] emb|CAB60384.2| Hypothetical protein Y48G10A.1 [Caenorhabditis elegans] ref|NP_493371.1| Y48G10A.1 [Caenorhabditis elegans] 2.0E-42
blast CAE63539 Hypothetical protein CBG08020 [Caenorhabditis briggsae] 4.0E-31
blast NP_001017796 hypothetical protein LOC550494 [Danio rerio] gb|AAH93144.1| Hypothetical protein LOC550494 [Danio rerio] 2.0E-18
Protein Domains
Database ID Description E-Value
Pfam IPR000801 EMBL-EBI Putative esterase 6.7E-60
Sequence
Target Sequence 
>C. ELEGANS:173221_S_AT
gagattctcgtcgatcaaggtgcggccgacaatttcctggctcaactcaaaccagaaacg
ctgaaatcgaaggaaaacgcggagattgtggtcagaatgcaagcggaattcgatcattcg
tattattttatcgcaagcttcatggctgatcatttcgaacatcatgcaaaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGATTCTCGTCGATCAAGGTGCGG 442 393 16 Antisense
CGATCAAGGTGCGGCCGACAATTTC 60 247 27 Antisense
GGCTCAACTCAAACCAGAAACGCTG 668 537 54 Antisense
CCAGAAACGCTGAAATCGAAGGAAA 293 271 67 Antisense
GGAAAACGCGGAGATTGTGGTCAGA 350 527 87 Antisense
GATTGTGGTCAGAATGCAAGCGGAA 207 435 99 Antisense
GCAAGCGGAATTCGATCATTCGTAT 269 321 114 Antisense
TCATTCGTATTATTTTATCGCAAGC 366 619 129 Antisense
TTATCGCAAGCTTCATGGCTGATCA 199 681 143 Antisense
GCTTCATGGCTGATCATTTCGAACA 589 305 152 Antisense
GATCATTTCGAACATCATGCAAAGA 178 421 163 Antisense
Sequence Source Affymetrix Proprietary Database