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[173218_s_at] acyl-CoA dehydrogenase

Description AV182309_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV182309 /DEF=Caenorhabditis elegans cDNA clone:yk636a12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 83      6grp_high1_10_10 > 47      4grp_highest_8_8 > 29      4grp_high_8_8 > 07      6grp_highest_nonorm > 48      6grp_total > 48      4grp_total > 0      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1640
1 2 3 4 range
A 5305.9
(2.6)
P 		4108.1
(-3)
P 		5060.4
(1.4)
P 		5398.5
(3)
P 		1290
B 4559.1
(-1)
P 		4025.2
(-3)
P 		4968.8
(0.5)
P 		5664.9
(3)
P 		1640
C 4168.4
(-2.3)
P 		4038.5
(-3)
P 		4885.7
(1.4)
P 		5195.5
(3)
P 		1157
avr 4677.8
(-0.3) 		4057.3
(-3) 		4971.6
(1) 		5419.6
(3) 		1362

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3637
1 2 3 4 5 6 range
A 5591
(3)
P 		2880.2
(-3)
P 		4221.3
(-0)
P 		4145.8
(-0.2)
P 		2992.7
(-2.8)
P 		5145.5
(2)
P 		2711
B 6517.2
(3)
P 		3491.6
(-2.7)
P 		3771.6
(-2.2)
P 		3941.3
(-1.9)
P 		3351.8
(-3)
P 		5235.6
(0.6)
P 		3165
C 5514.6
(3)
P 		3074.1
(-3)
P 		4253.4
(-0.1)
P 		3608.8
(-1.7)
P 		3321.7
(-2.4)
P 		4968.9
(1.7)
P 		2441
avr 5874.3
(3) 		3148.6
(-3) 		4082.1
(-0.9) 		3898.6
(-1.3) 		3222.1
(-2.8) 		5116.7
(1.3) 		2726
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1142
1 2 3 4 range
A 1931.9
(3)
P 		891.8
(-2.5)
P 		1322.9
(-0.2)
P 		790.2
(-3)
P 		1142
B 1453.8
(3)
P 		994.1
(-3)
P 		1151.4
(-0.9)
P 		1207.2
(-0.2)
P 		460
C 1379.9
(0.7)
P 		1161.1
(-0.9)
P 		1702.8
(3)
P 		876
(-3)
P 		827
avr 1588.5
(3) 		1015.7
(-2.4) 		1392.4
(1.1) 		957.8
(-3) 		631

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1542
1 2 3 4 5 6 range
A 1030.7
(-0.8)
P 		1024.3
(-0.9)
P 		919.3
(-2.7)
P 		1051.5
(-0.5)
P 		903.1
(-3)
P 		1252.8
(3)
P 		350
B 2267.7
(3)
P 		1162.2
(-1.9)
P 		915.9
(-3)
P 		1043.9
(-2.4)
P 		1361.8
(-1)
P 		1952.3
(1.6)
P 		1352
C 2044
(3)
P 		938
(-2)
P 		1082.6
(-1.4)
P 		725.7
(-3)
P 		1074.8
(-1.4)
P 		1663.4
(1.3)
P 		1318
avr 1780.8
(3) 		1041.5
(-2.3) 		972.6
(-2.8) 		940.4
(-3) 		1113.2
(-1.8) 		1622.8
(1.9) 		840
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173218_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26783
Sequence Type Exemplar sequence
Representative Public ID AV182309 NCBI
Target Description AV182309_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV182309 /DEF=Caenorhabditis elegans cDNA clone:yk636a12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078387(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078387 NCBI Caenorhabditis elegans T08G2.3 (T08G2.3) mRNA, complete cds. 11/11 A 
SNAP00000027867 ENSEMBL cdna:SNAP chromosome:CEL140:X:17213179:17214808:-1 11/11 None
GENEFINDER00000027887 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:17213179:17214808:-1 11/11 None
T08G2.3.1 ENSEMBL cdna:known chromosome:CEL140:X:17213070:17214817:-1 gene:T08G2.3 11/11 A 
T08G2.3.2 ENSEMBL cdna:known chromosome:CEL140:X:17213070:17214815:-1 gene:T08G2.3 11/11 A 
T08G2.3.3 ENSEMBL cdna:known chromosome:CEL140:X:17213089:17214838:-1 gene:T08G2.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17213144-17213464(-) 90.33 90.33
Public Domain and Genome References
Gene Title acyl-CoA dehydrogenase
Ensembl T08G2.3
Entrez Gene 181757 Entrez gene
SwissProt Q22347 EMBL-EBI
WormBase CE07473 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1604449_AT similar to Acyl-CoA dehydrogenase, medium-chain specific, mitochondrial precursor (MCAD) cfa
CANINE_2:CFA.1658.1.S1_A_AT similar to Acyl-CoA dehydrogenase, medium-chain specific, mitochondrial precursor (MCAD) cfa
CANINE_2:CFAAFFX.31225.1.S1_AT similar to Acyl-CoA dehydrogenase, medium-chain specific, mitochondrial precursor (MCAD) cfa
CANINE_2:CFAAFFX.31225.1.S1_S_AT similar to Acyl-CoA dehydrogenase, medium-chain specific, mitochondrial precursor (MCAD) cfa
DROSOPHILA_2:1626566_AT dm
DROSGENOME1:154110_AT dm
HG-U133A:202502_AT acyl-Coenzyme A dehydrogenase, C-4 to C-12 straight chain hs
HG-U133A_2:202502_AT acyl-Coenzyme A dehydrogenase, C-4 to C-12 straight chain hs
HG-U133_PLUS_2:202502_AT acyl-Coenzyme A dehydrogenase, C-4 to C-12 straight chain hs
HG-FOCUS:202502_AT acyl-Coenzyme A dehydrogenase, C-4 to C-12 straight chain hs
HUGENEFL:M91432_AT acyl-Coenzyme A dehydrogenase, C-4 to C-12 straight chain hs
U133_X3P:G4557230_3P_AT acyl-Coenzyme A dehydrogenase, C-4 to C-12 straight chain hs
HG-U95AV2:37532_AT acyl-Coenzyme A dehydrogenase, C-4 to C-12 straight chain hs
MOE430A:1415984_AT acetyl-Coenzyme A dehydrogenase, medium chain mm
MOUSE430A_2:1415984_AT acetyl-Coenzyme A dehydrogenase, medium chain mm
MOUSE430_2:1415984_AT acetyl-Coenzyme A dehydrogenase, medium chain mm
MU11KSUBA:U07159_F_AT acetyl-Coenzyme A dehydrogenase, medium chain mm
MU11KSUBB:MSA.1660.0_F_AT acetyl-Coenzyme A dehydrogenase, medium chain mm
MG-U74AV2:92581_AT acetyl-Coenzyme A dehydrogenase, medium chain mm
MU19KSUBA:TC16398_AT Acetyl-Coenzyme A dehydrogenase, medium chain, mRNA (cDNA clone MGC:19161 IMAGE:4222450) mm
MU19KSUBA:TC16399_F_AT Acetyl-Coenzyme A dehydrogenase, medium chain, mRNA (cDNA clone MGC:19161 IMAGE:4222450) mm
MU19KSUBA:TC21660_AT Acetyl-Coenzyme A dehydrogenase, medium chain, mRNA (cDNA clone MGC:19161 IMAGE:4222450) mm
RT-U34:J02791_AT acetyl-Coenzyme A dehydrogenase, medium chain rn
RG-U34A:J02791_AT acetyl-Coenzyme A dehydrogenase, medium chain rn
RAE230A:1367702_AT acetyl-Coenzyme A dehydrogenase, medium chain rn
RAT230_2:1367702_AT acetyl-Coenzyme A dehydrogenase, medium chain rn
RG-U34C:RC_AI112174_AT Acetyl-Coenzyme A dehydrogenase, medium chain rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3995 acyl-CoA dehydrogenase activity inferred from electronic annotation QuickGO AmiGO
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB52493 Hypothetical protein T08G2.3 [Caenorhabditis elegans] ref|NP_510788.1| T08G2.3 [Caenorhabditis elegans] sp|Q22347|ACADM_CAEEL Probable acyl-CoA dehydrogenase, medium-chain specific, mitochondrial precursor (MCAD) 0.0
blast CAE69691 Hypothetical protein CBG15946 [Caenorhabditis briggsae] 0.0
blast CAE57903 Hypothetical protein CBG00953 [Caenorhabditis briggsae] 0.0
Protein Families
Method ID Description E-Value
ec ACDM_DROME (Q9VSA3) Probable acyl-CoA dehydrogenase, medium-chain specific, mitochondrial precursor (EC 1.3.99.3) (MCAD) 1.0E-160
Protein Domains
Database ID Description E-Value
Pfam IPR006090 EMBL-EBI Acyl-CoA dehydrogenase, C-terminal 6.7E-74
Pfam IPR006091 EMBL-EBI Acyl-CoA dehydrogenase, central domain 2.7E-59
Pfam IPR006092 EMBL-EBI Acyl-CoA dehydrogenase, N-terminal 1.5E-26
Sequence
Target Sequence 
>C. ELEGANS:173218_S_AT
ctcttcatacaatgcttcgatcgccaagtgctttgccgccgacactgccaaccaagctgc
caccaacgctgttcagatctttggaggaaatggcttcaactctgagtatccagtggagaa
actgatgcgtgatgccaagatctatcagatctacgagggaacctcgcaaattcagcgcat
tgtcatctcgcgcatgcttctcggacatttcgcgcaaaatggaactagcaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCTTCATACAATGCTTCGATCGCC 469 229 13 Antisense
TACAATGCTTCGATCGCCAAGTGCT 248 641 20 Antisense
TGCCACCAACGCTGTTCAGATCTTT 556 585 70 Antisense
AACGCTGTTCAGATCTTTGGAGGAA 554 145 77 Antisense
GAAATGGCTTCAACTCTGAGTATCC 408 361 99 Antisense
TTCAACTCTGAGTATCCAGTGGAGA 148 685 107 Antisense
GCGTGATGCCAAGATCTATCAGATC 610 291 139 Antisense
GGGAACCTCGCAAATTCAGCGCATT 631 493 169 Antisense
TCAGCGCATTGTCATCTCGCGCATG 370 625 184 Antisense
TGCTTCTCGGACATTTCGCGCAAAA 491 579 207 Antisense
TTTCGCGCAAAATGGAACTAGCAGA 181 669 220 Antisense
Sequence Source Affymetrix Proprietary Database