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[173217_at]

Description AV181671_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV181671 /DEF=Caenorhabditis elegans cDNA clone:yk623d11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 40      6grp_high1_10_10 > 05      4grp_highest_8_8 > 54      4grp_high_8_8 > 18      6grp_highest_nonorm > 11      6grp_total > 05      4grp_total > 22      6grp_highest_sub > De      6grp_cgc > 22      6grp_high1_sub > De      6grp_cgc_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1153
1 2 3 4 range
A 2429.1
(3)
P 		1730.2
(-1.5)
P 		1493.7
(-3)
P 		2399.5
(2.8)
P 		935
B 2065.2
(0.8)
P 		1994.5
(0.4)
P 		1333.1
(-3)
P 		2485.9
(3)
P 		1153
C 2332.7
(3)
P 		1810.6
(-2.9)
P 		1799.1
(-3)
P 		1907.1
(-1.8)
P 		534
avr 2275.7
(3) 		1845.1
(-0.5) 		1542
(-3) 		2264.2
(2.9) 		734

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1413
1 2 3 4 5 6 range
A 2067.9
(3)
P 		2014.3
(2.7)
P 		1382.8
(-0.6)
P 		1419.4
(-0.4)
P 		1364.8
(-0.7)
P 		915.5
(-3)
P 		1152
B 2274.8
(3)
P 		1837.6
(0.3)
P 		1315.7
(-2.9)
P 		1603.2
(-1.1)
P 		1312.9
(-2.9)
P 		1301.6
(-3)
P 		973
C 2328.9
(3)
P 		1816.4
(0.3)
P 		1442.6
(-1.7)
P 		1265.3
(-2.7)
P 		1540.4
(-1.2)
P 		1202.4
(-3)
P 		1127
avr 2223.9
(3) 		1889.4
(1.1) 		1380.4
(-1.7) 		1429.3
(-1.4) 		1406
(-1.5) 		1139.8
(-3) 		1084
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 576
1 2 3 4 range
A 884.4
(3)
P 		375.6
(-2.7)
P 		390.5
(-2.6)
P 		351.2
(-3)
P 		533
B 658.6
(3)
P 		492.6
(0.2)
P 		308.9
(-3)
P 		529.7
(0.8)
P 		350
C 772.2
(3)
P 		520.5
(-0.4)
P 		627.1
(1.1)
P 		321.6
(-3)
P 		451
avr 771.7
(3) 		462.9
(-2) 		442.2
(-2.3) 		400.8
(-3) 		371

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 640
1 2 3 4 5 6 range
A 381.2
(-1.1)
P 		716.4
(3)
P 		301.1
(-2)
P 		360
(-1.3)
P 		411.8
(-0.7)
P 		222.9
(-3)
P 		494
B 791.5
(3)
P 		611.7
(0.7)
P 		319.5
(-3)
P 		424.6
(-1.7)
P 		533.4
(-0.3)
P 		485.4
(-0.9)
P 		472
C 863.2
(3)
P 		554.3
(-0)
P 		367.2
(-1.9)
P 		254.4
(-3)
P 		498.5
(-0.6)
P 		402.5
(-1.5)
P 		609
avr 678.6
(3) 		627.5
(2.1) 		329.3
(-3) 		346.3
(-2.7) 		481.2
(-0.4) 		370.3
(-2.3) 		349
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173217_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26758
Sequence Type Exemplar sequence
Representative Public ID AV181671 NCBI
Target Description AV181671_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV181671 /DEF=Caenorhabditis elegans cDNA clone:yk623d11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077443(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077443 NCBI Caenorhabditis elegans LIM domain Binding Protein family member (ldb-1) (ldb-1) mRNA, complete cds. 9/11 None
F58A3.1c ENSEMBL cdna:known chromosome:CEL140:X:11028839:11040534:1 gene:F58A3.1 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181292 3 1 NM_077443 173217_at (9), 174597_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11039851-11040153(+) 90.0 90.0
Public Domain and Genome References
Ensembl F58A3.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54257 Hypothetical protein F58A3.1c [Caenorhabditis elegans] ref|NP_509844.3| LIM domain Binding Protein family member (ldb-1) [Caenorhabditis elegans] 0.0
blast AAB38367 F58A3.1b [Caenorhabditis elegans] 0.0
blast CAB02672 Hypothetical protein F58A3.1b [Caenorhabditis elegans] ref|NP_509845.1| LIM domain Binding Protein family member (ldb-1) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002691 EMBL-EBI LIM binding protein 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:173217_AT
taaggtttttcaattcaactcaccgaatgtgcccctctctcttctcctctactaccgagt
gtgttctgatgcaacgaaatcatgacaggccacgaaacaaatcaatttattccgtctcct
atttccagtccactcaaaacactgtttcagcaaatacattag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAGGTTTTTCAATTCAACTCACCG 572 611 46 Antisense
CAATTCAACTCACCGAATGTGCCCC 12 181 56 Antisense
TTCTCCTCTACTACCGAGTGTGTTC 499 691 87 Antisense
CTACTACCGAGTGTGTTCTGATGCA 169 227 94 Antisense
GAGTGTGTTCTGATGCAACGAAATC 417 401 102 Antisense
GCAACGAAATCATGACAGGCCACGA 659 319 116 Antisense
GACAGGCCACGAAACAAATCAATTT 319 369 129 Antisense
AATCAATTTATTCCGTCTCCTATTT 689 171 145 Antisense
TCCTATTTCCAGTCCACTCAAAACA 140 593 162 Antisense
AGTCCACTCAAAACACTGTTTCAGC 547 59 172 Antisense
AACACTGTTTCAGCAAATACATTAG 20 135 183 Antisense
Sequence Source Affymetrix Proprietary Database