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[173216_s_at]

Description AV181502_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV181502 /DEF=Caenorhabditis elegans cDNA clone:yk621c10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 38      6grp_high1_10_10 > 83      4grp_highest_8_8 > 18      4grp_high_8_8 > 63      6grp_highest_nonorm > 73      6grp_total > 74      4grp_total > 48      6grp_highest_sub > 04      6grp_high1_sub > 04      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 200
1 2 3 4 range
A 279.6
(-1.5)
P 		301.2
(-0.7)
P 		399.1
(3)
P 		241
(-3)
P 		158
B 202.3
(-2.8)
P 		257.2
(0.5)
P 		298.1
(3)
P 		198.7
(-3)
P 		99
C 287.6
(-0.6)
P 		244.4
(-2.4)
P 		370.8
(3)
P 		230.6
(-3)
P 		140
avr 256.5
(-1.5) 		267.6
(-1) 		356
(3) 		223.4
(-3) 		133

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 458
1 2 3 4 5 6 range
A 319
(-3)
P 		350.9
(-2.6)
P 		596.6
(0.6)
P 		776.6
(3)
P 		475.9
(-0.9)
P 		497.9
(-0.7)
P 		458
B 397.1
(-1.8)
P 		364.9
(-3)
P 		422.8
(-0.8)
P 		514.9
(2.7)
P 		477
(1.2)
P 		523.5
(3)
P 		159
C 372.7
(-2.5)
P 		351.3
(-3)
P 		541
(1.5)
P 		604.8
(3)
P 		490.4
(0.3)
P 		548.2
(1.7)
P 		254
avr 362.9
(-2.8) 		355.7
(-3) 		520.1
(0.6) 		632.1
(3) 		481.1
(-0.3) 		523.2
(0.6) 		276
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 101.8
(2.8)
P 		65.4
(-0.4)
P 		104.3
(3)
P 		35.3
(-3)
P 		69
B 64.5
(2)
P 		63.5
(1.7)
P 		69.1
(3)
P 		42.4
(-3)
P 		27
C 95.2
(0.7)
P 		70.3
(-0.9)
P 		129.3
(3)
P 		38.9
(-3)
P 		90
avr 87.2
(1.7) 		66.4
(-0.3) 		100.9
(3) 		38.9
(-3) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 138
1 2 3 4 5 6 range
A 58.8
(-3)
P 		124.8
(-0.1)
P 		129.9
(0.1)
P 		197
(3)
P 		143.6
(0.7)
P 		121.2
(-0.3)
P 		138
B 138.2
(-0.7)
P 		121.5
(-1.8)
P 		102.7
(-3)
P 		136.4
(-0.8)
P 		193.8
(2.9)
P 		195.2
(3)
P 		93
C 138.1
(-0.6)
P 		107.2
(-3)
P 		137.7
(-0.6)
P 		121.6
(-1.9)
P 		158.7
(1)
P 		183.5
(3)
P 		76
avr 111.7
(-3) 		117.8
(-2.3) 		123.4
(-1.7) 		151.7
(1.4) 		165.4
(2.9) 		166.6
(3) 		55
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173216_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26743
Sequence Type Exemplar sequence
Representative Public ID AV181502 NCBI
Target Description AV181502_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV181502 /DEF=Caenorhabditis elegans cDNA clone:yk621c10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058938(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058938 NCBI Caenorhabditis elegans C43E11.11 (C43E11.11) mRNA, complete cds. 11/11 None
SNAP00000031014 ENSEMBL cdna:SNAP chromosome:CEL140:I:4249500:4253073:1 11/11 None
GENEFINDER00000031029 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4249500:4253845:1 11/11 None
C43E11.11 ENSEMBL cdna:known chromosome:CEL140:I:4249494:4253145:1 gene:C43E11.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4252742-4253004(+) 81.67 81.67
Public Domain and Genome References
Gene Title
Ensembl C43E11.11
Entrez Gene 172025 Entrez gene
SwissProt P91151 EMBL-EBI
WormBase CE32607 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:259995_AT Golgi transport complex protein-related at
CANINE:1591681_AT similar to component of oligomeric golgi complex 5 isoform 1 cfa
CANINE_2:CFA.17303.1.S1_S_AT similar to component of oligomeric golgi complex 5 isoform 1 cfa
CANINE_2:CFA.17303.2.S1_AT similar to component of oligomeric golgi complex 5 isoform 1 cfa
CANINE_2:CFAAFFX.6836.1.S1_S_AT similar to component of oligomeric golgi complex 5 isoform 1 cfa
HG-U133A_2:203630_S_AT component of oligomeric golgi complex 5 hs
HG-U133_PLUS_2:203630_S_AT component of oligomeric golgi complex 5 hs
HG-U133A:203630_S_AT component of oligomeric golgi complex 5 hs
HU35KSUBA:RC_AA424590_AT component of oligomeric golgi complex 5 hs
U133_X3P:G5453669_3P_A_AT component of oligomeric golgi complex 5 hs
U133_X3P:HS.239631.0.S2_3P_A_AT component of oligomeric golgi complex 5 hs
HG-U133A_2:203629_S_AT component of oligomeric golgi complex 5 hs
HG-FOCUS:203629_S_AT component of oligomeric golgi complex 5 hs
HG-U133_PLUS_2:203629_S_AT component of oligomeric golgi complex 5 hs
HG-U133A:203629_S_AT component of oligomeric golgi complex 5 hs
HG-U95AV2:34737_AT component of oligomeric golgi complex 5 hs
HU35KSUBB:RC_R87432_AT Component of oligomeric golgi complex 5 hs
HG-U95B:53353_AT Component of oligomeric golgi complex 5 hs
HG-U133_PLUS_2:238382_X_AT Component of oligomeric golgi complex 5 hs
HG-U133B:238382_X_AT Component of oligomeric golgi complex 5 hs
HG-U95C:55482_I_AT Component of oligomeric golgi complex 5 hs
HG-U95C:55483_R_AT Component of oligomeric golgi complex 5 hs
HG-U95D:71293_AT Component of oligomeric golgi complex 5 hs
HG-U95D:72564_AT Component of oligomeric golgi complex 5 hs
HG-U95D:76172_AT Component of oligomeric golgi complex 5 hs
HG-U95D:79194_R_AT Component of oligomeric golgi complex 5 hs
U133_X3P:HS.138036.0.A1_3P_AT Component of oligomeric golgi complex 5 hs
U133_X3P:HS.138036.0.S1_3P_AT Component of oligomeric golgi complex 5 hs
Protein Similarities
Method ID Description E-Value
blast AAN84839 Hypothetical protein C43E11.11 [Caenorhabditis elegans] ref|NP_491339.2| C43E11.11 [Caenorhabditis elegans] 0.0
blast A87754 protein C43E11.11 [imported] - Caenorhabditis elegans 0.0
blast AAN84840 Hypothetical protein C43E11.12 [Caenorhabditis elegans] ref|NP_871843.1| C43E11.12 [Caenorhabditis elegans] 5.0E-61
Sequence
Target Sequence 
>C. ELEGANS:173216_S_AT
aaaagtcgattttaatccagctactagtatccgatagcccttcagaacttccacttccta
atcaatctgtaaaatggacgcccgaagaatatgtaaagtggtacgaagagcacactgagc
tggaagttctcgcattcctcaacggacttgtgtcttcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAAGTCGATTTTAATCCAGCTACT 545 129 33 Antisense
TAATCCAGCTACTAGTATCCGATAG 584 635 45 Antisense
AGTATCCGATAGCCCTTCAGAACTT 512 61 58 Antisense
TCAGAACTTCCACTTCCTAATCAAT 127 623 74 Antisense
CTTCCACTTCCTAATCAATCTGTAA 555 219 80 Antisense
TCAATCTGTAAAATGGACGCCCGAA 393 627 94 Antisense
GGACGCCCGAAGAATATGTAAAGTG 300 523 108 Antisense
AGAGCACACTGAGCTGGAAGTTCTC 490 69 139 Antisense
CACTGAGCTGGAAGTTCTCGCATTC 254 199 145 Antisense
TCGCATTCCTCAACGGACTTGTGTC 241 601 162 Antisense
TTCCTCAACGGACTTGTGTCTTCGT 227 697 167 Antisense
Sequence Source Affymetrix Proprietary Database