[Home] | [Total List]

[173215_at]

Description AV181323_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV181323 /DEF=Caenorhabditis elegans cDNA clone:yk618h10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 85      6grp_high1_10_10 > 57      4grp_highest_8_8 > 43      4grp_high_8_8 > 32      6grp_highest_nonorm > 85      6grp_total > 59      4grp_total > 55      6grp_highest_sub > Cu      6grp_cgc > 39      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 648
1 2 3 4 range
A 1060.5
(3)
P 		427.7
(-3)
P 		637
(-1)
P 		495.6
(-2.4)
P 		633
B 749.2
(3)
P 		572.2
(-0.2)
P 		412.1
(-3)
P 		470
(-2)
P 		337
C 814.2
(3)
P 		527.5
(-3)
P 		663.4
(-0.2)
P 		565.9
(-2.2)
P 		287
avr 874.6
(3) 		509.1
(-3) 		570.8
(-2) 		510.5
(-3) 		366

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 801
1 2 3 4 5 6 range
A 923.4
(1.6)
P 		705.7
(-0.8)
P 		677.8
(-1.1)
P 		511.8
(-3)
P 		1050.1
(3)
P 		970.6
(2.1)
P 		538
B 998.4
(0.9)
P 		701.5
(-1.3)
P 		477.5
(-3)
P 		827
(-0.4)
P 		686.3
(-1.4)
P 		1278
(3)
P 		801
C 696.9
(-1.2)
P 		862.5
(1.2)
P 		676.3
(-1.5)
P 		990.9
(3)
P 		573.6
(-3)
P 		817.2
(0.5)
P 		417
avr 872.9
(0.8) 		756.6
(-0.9) 		610.5
(-3) 		776.6
(-0.6) 		770
(-0.7) 		1021.9
(3) 		411
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 314
1 2 3 4 range
A 386.1
(3)
P 		92.8
(-2.6)
P 		166.5
(-1.2)
P 		72.5
(-3)
P 		314
B 238.9
(3)
P 		141.3
(-1.1)
P 		95.5
(-3)
P 		100.2
(-2.8)
P 		143
C 269.5
(3)
P 		151.7
(-1.1)
P 		231.2
(1.7)
P 		95.4
(-3)
P 		174
avr 298.2
(3) 		128.6
(-1.9) 		164.4
(-0.8) 		89.4
(-3) 		209

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 361
1 2 3 4 5 6 range
A 170.2
(-1.7)
P 		251
(0.9)
P 		147.6
(-2.4)
P 		129.8
(-3)
P 		316.9
(3)
P 		236.3
(0.4)
P 		187
B 347.4
(0.9)
P 		233.5
(-1)
P 		115.9
(-3)
P 		219
(-1.3)
P 		278.8
(-0.3)
P 		476.6
(3)
P 		361
C 258.3
(2.1)
P 		263.2
(2.4)
P 		172.1
(-3)
P 		199.3
(-1.4)
P 		185.6
(-2.2)
P 		273.6
(3)
P 		102
avr 258.6
(0.7) 		249.2
(0.4) 		145.2
(-3) 		182.7
(-1.8) 		260.4
(0.8) 		328.8
(3) 		184
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173215_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26726
Sequence Type Exemplar sequence
Representative Public ID AV181323 NCBI
Target Description AV181323_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV181323 /DEF=Caenorhabditis elegans cDNA clone:yk618h10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066326(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066326 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-261) (tag-261) mRNA, complete cds. 11/11 None
C29E4.2 ENSEMBL cdna:known chromosome:CEL140:III:7941641:7945508:1 gene:C29E4.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7945154-7945411(+) 85.67 85.67
Public Domain and Genome References
Gene Title
Gene Symbol tag-261
Ensembl C29E4.2
Entrez Gene 176116 Entrez gene
SwissProt P34341 EMBL-EBI
WormBase CE30620 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM22041 Temporarily assigned gene name protein 261 [Caenorhabditis elegans] ref|NP_498727.2| Temporarily Assigned Gene name family member (tag-261) [Caenorhabditis elegans] sp|P34341|YK62_CAEEL Hypothetical protein C29E4.2 in chromosome III 0.0
blast S44769 C29E4.2 protein - Caenorhabditis elegans 0.0
blast CAE66907 Hypothetical protein CBG12291 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
scop a.2.7.Seryl-tRNA synthetase (SerRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) 4.19999980926514
Sequence
Target Sequence 
>C. ELEGANS:173215_AT
ctcttgatgcctaatttataattattgtttttttngcattaaatctcccgaaaaccatct
taatttatttaaacattcctcattgtctctacttgtatctcgatttctggctatactttc
attttactgnatcaattaattaacttctagatgccaagtatttttcttctgttc

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCTTGATGCCTAATTTATAATTAT 392 229 74 Antisense
GCATTAAATCTCCCGAAAACCATCT 647 305 109 Antisense
TCTCCCGAAAACCATCTTAATTTAT 94 611 117 Antisense
TAAACATTCCTCATTGTCTCTACTT 70 641 143 Antisense
CCTCATTGTCTCTACTTGTATCTCG 341 267 151 Antisense
GTCTCTACTTGTATCTCGATTTCTG 679 469 158 Antisense
TACTTGTATCTCGATTTCTGGCTAT 204 645 163 Antisense
ATCTCGATTTCTGGCTATACTTTCA 507 33 170 Antisense
TTCTGGCTATACTTTCATTTTACTG 267 693 178 Antisense
CAATTAATTAACTTCTAGATGCCAA 369 175 206 Antisense
GATGCCAAGTATTTTTCTTCTGTTC 355 415 223 Antisense
Sequence Source Affymetrix Proprietary Database