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[173214_s_at] phosphotransferase /// ATP transferase

Description AV181428_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV181428 /DEF=Caenorhabditis elegans cDNA clone:yk620c12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 25      6grp_high1_10_10 > 41      6grp_highest_nonorm > 06      6grp_total > 52      4grp_total > 59      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10725
1 2 3 4 range
A 6521.9
(0.6)
P 		10858.2
(3)
P 		10334.7
(2.7)
P 		133.1
(-3)
A 		10725
B 6957.3
(1)
P 		9664.8
(2.6)
P 		10334.8
(3)
P 		200.5
(-3)
A 		10134
C 6619.9
(1.1)
P 		9574.5
(2.9)
P 		9690.1
(3)
P 		239.6
(-3)
A 		9451
avr 6699.7
(0.9) 		10032.5
(2.9) 		10119.9
(3) 		191.1
(-3) 		9929

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11749
1 2 3 4 5 6 range
A 7386.7
(-1.4)
P 		9226
(-0.3)
P 		14662.3
(3)
P 		9783.5
(0.1)
P 		6725.9
(-1.8)
P 		4659.7
(-3)
P 		10003
B 7636
(-1.6)
P 		9688.4
(-0.6)
P 		16408.6
(3)
P 		9750.8
(-0.5)
P 		7408
(-1.8)
P 		5075.5
(-3)
P 		11333
C 6355.8
(-2.4)
P 		10115
(0.9)
P 		12617.8
(3)
P 		9851.1
(0.6)
P 		7381.5
(-1.5)
P 		5622.3
(-3)
P 		6996
avr 7126.2
(-1.7) 		9676.5
(-0.1) 		14562.9
(3) 		9795.1
(-0) 		7171.8
(-1.7) 		5119.2
(-3) 		9444
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3358
1 2 3 4 range
A 2374.6
(2.3)
P 		2357
(2.2)
P 		2701.7
(3)
P 		19.5
(-3)
A 		2682
B 2218.6
(2.6)
P 		2387
(3)
P 		2394.8
(3)
P 		42.7
(-3)
A 		2352
C 2191.4
(0.9)
P 		2752.7
(1.9)
P 		3377.3
(3)
P 		40.4
(-3)
A 		3337
avr 2261.5
(1.8) 		2498.9
(2.3) 		2824.6
(3) 		34.2
(-3) 		2790

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2850
1 2 3 4 5 6 range
A 1361.7
(-2.4)
P 		3281.2
(3)
P 		3193.1
(2.8)
P 		2481.3
(0.8)
P 		2029.6
(-0.5)
P 		1134.5
(-3)
P 		2147
B 2657
(-0.8)
P 		3224.8
(0.8)
P 		3984.5
(3)
P 		2582.7
(-1)
P 		3009.8
(0.2)
P 		1892.6
(-3)
P 		2092
C 2355.8
(-0.9)
P 		3086.4
(2.4)
P 		3211.5
(3)
P 		1981.1
(-2.6)
P 		2388.5
(-0.7)
P 		1882.1
(-3)
P 		1329
avr 2124.8
(-1.4) 		3197.5
(2.1) 		3463
(3) 		2348.4
(-0.7) 		2476
(-0.2) 		1636.4
(-3) 		1827
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173214_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26731
Sequence Type Exemplar sequence
Representative Public ID AV181428 NCBI
Target Description AV181428_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV181428 /DEF=Caenorhabditis elegans cDNA clone:yk620c12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058656(11), NM_058626(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058656 NCBI Caenorhabditis elegans W10C8.5 (W10C8.5) mRNA, complete cds. 11/11 A 
NM_058626 NCBI Caenorhabditis elegans F32B5.1 (phosphotransferase) mRNA, complete cds. 11/11 A 
SNAP00000012336 ENSEMBL cdna:SNAP chromosome:CEL140:I:2854052:2855671:-1 11/11 None
GENEFINDER00000012338 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2854052:2855671:-1 11/11 None
SNAP00000013301 ENSEMBL cdna:SNAP chromosome:CEL140:I:2701611:2702083:1 11/11 None
GENEFINDER00000013332 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2701611:2702083:1 11/11 None
F32B5.1 ENSEMBL cdna:known chromosome:CEL140:I:2700421:2702083:1 gene:F32B5.1 11/11 A 
W10C8.5.1 ENSEMBL cdna:known chromosome:CEL140:I:2853979:2855733:-1 gene:W10C8.5 11/11 None
W10C8.5.3 ENSEMBL cdna:known chromosome:CEL140:I:2853979:2855716:-1 gene:W10C8.5 11/11 None
W10C8.5.2 ENSEMBL cdna:known chromosome:CEL140:I:2853979:2855735:-1 gene:W10C8.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2701748-2702068(+) 88.67 88.67
Public Domain and Genome References
Gene Title phosphotransferase
ATP transferase
Ensembl F32B5.1
W10C8.5
Entrez Gene 171831 Entrez gene
171850 Entrez gene
SwissProt O01854 EMBL-EBI
O45011 EMBL-EBI
WormBase CE28230 Wormbase
CE18353 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1636098_AT dm
DROSGENOME1:148442_AT dm
DROSOPHILA_2:1636098_AT dm
DROSGENOME1:148442_AT dm
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16301 kinase activity inferred from electronic annotation QuickGO AmiGO
16772 transferase activity, transferring phosphorus-containing groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_491057 W10C8.5 [Caenorhabditis elegans] gb|AAK21503.1| Hypothetical protein W10C8.5 [Caenorhabditis elegans] 0.0
blast AAB54206 Hypothetical protein F32B5.1 [Caenorhabditis elegans] ref|NP_491027.1| F32B5.1 [Caenorhabditis elegans] 0.0
blast CAE60596 Hypothetical protein CBG04232 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000749 EMBL-EBI ATP:guanido phosphotransferase 7.7E-33
Pfam IPR000749 EMBL-EBI ATP:guanido phosphotransferase 1.0E-126
Pfam IPR000749 EMBL-EBI ATP:guanido phosphotransferase 1.5E-31
Pfam IPR000749 EMBL-EBI ATP:guanido phosphotransferase 1.0E-126
Pfam IPR000749 EMBL-EBI ATP:guanido phosphotransferase 2.4E-57
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491057.1 1 13-30
W10C8.5.1 1 13-30
W10C8.5.3 1 13-30
W10C8.5.2 1 13-30
SNAP00000012336 1 13-30
GENEFINDER00000012338 1 13-30
Sequence
Target Sequence 
>C. ELEGANS:173214_S_AT
aacaaacctcggatcaacagttcgtgcatccgtccacattgctcttccaaagctcgccgc
ccgcaaggacttcatcgagatttgcgagaagctcaatctccaagtgcgcggaatccacgg
agaacactcggaatctgttggaggagtctatgacatttctaacaaggctcgcct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACAAACCTCGGATCAACAGTTCGT 243 129 42 Antisense
ACCTCGGATCAACAGTTCGTGCATC 19 89 47 Antisense
GGATCAACAGTTCGTGCATCCGTCC 571 511 52 Antisense
GCCCGCAAGGACTTCATCGAGATTT 369 285 100 Antisense
CAAGGACTTCATCGAGATTTGCGAG 427 183 105 Antisense
GATTTGCGAGAAGCTCAATCTCCAA 31 429 120 Antisense
AGCTCAATCTCCAAGTGCGCGGAAT 673 79 131 Antisense
CAATCTCCAAGTGCGCGGAATCCAC 393 181 135 Antisense
TCCAAGTGCGCGGAATCCACGGAGA 386 587 140 Antisense
CTGTTGGAGGAGTCTATGACATTTC 556 237 176 Antisense
ATGACATTTCTAACAAGGCTCGCCT 241 45 191 Antisense
Sequence Source Affymetrix Proprietary Database