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[173212_at]

Description AV180397_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV180397 /DEF=Caenorhabditis elegans cDNA clone:yk606h12 : 3prime end, single read.
Cluster 6grp_total > 63      4grp_total > 56      6grp_cgc > 75      6grp_cgc_sub > 03_04      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 39.4
(0.6)
A 		25.5
(-0.8)
A 		65.2
(3)
A 		1.7
(-3)
A 		64
B 6.5
(-3)
A 		37.1
(3)
A 		34.7
(2.5)
A 		24
(0.4)
A 		31
C 17.9
(-1.8)
A 		7.4
(-2.8)
A 		71.3
(3)
A 		5.2
(-3)
A 		66
avr 21.3
(-1.6) 		23.3
(-1.3) 		57.1
(3) 		10.3
(-3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 53
(0.4)
A 		59.9
(1.2)
A 		41.6
(-0.9)
A 		22.3
(-3)
A 		45.3
(-0.5)
A 		76.6
(3)
A 		54
B 26.7
(-3)
A 		55.4
(1.8)
A 		62.7
(3)
A 		60.3
(2.6)
A 		60.1
(2.6)
A 		35.9
(-1.5)
A 		36
C 41
(-3)
A 		48.7
(-2.1)
A 		81.1
(1.9)
A 		90
(3)
A 		54.9
(-1.3)
A 		44.6
(-2.6)
A 		49
avr 40.2
(-3) 		54.7
(1) 		61.8
(3) 		57.5
(1.8) 		53.4
(0.7) 		52.4
(0.4) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 14.3
(2)
A 		5.5
(-1.1)
A 		17.1
(3)
A 		0.3
(-3)
A 		17
B 2.1
(-3)
A 		9.2
(3)
A 		8
(2)
A 		5.1
(-0.5)
A 		7
C 5.9
(-1.8)
A 		2.1
(-2.7)
A 		24.9
(3)
A 		0.9
(-3)
A 		24
avr 7.4
(-0.8) 		5.6
(-1.6) 		16.7
(3) 		2.1
(-3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 9.8
(-1.4)
A 		21.3
(3)
A 		9.1
(-1.7)
A 		5.6
(-3)
A 		13.7
(0.1)
A 		18.7
(2)
A 		16
B 9.3
(-3)
A 		18.4
(0.6)
A 		15.2
(-0.7)
A 		16
(-0.3)
A 		24.4
(3)
A 		13.4
(-1.4)
A 		15
C 15.2
(-2.7)
A 		14.9
(-3)
A 		20.6
(3)
A 		18.1
(0.4)
A 		17.8
(0.1)
A 		14.9
(-3)
A 		6
avr 11.4
(-3) 		18.2
(2.7) 		15
(-0) 		13.2
(-1.5) 		18.6
(3) 		15.7
(0.6) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173212_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26693
Sequence Type Exemplar sequence
Representative Public ID AV180397 NCBI
Target Description AV180397_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV180397 /DEF=Caenorhabditis elegans cDNA clone:yk606h12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) AV180397
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
AV180397 AV180397_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV180397 /DEF=Caenorhabditis elegans cDNA clone:yk606h12 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_068617 5/11 Cross Hyb Matching Probes A 
F15B10.2.1 5/11 Cross Hyb Matching Probes A 
F15B10.2.2 5/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6607429-6607587(-) 52.67 52.67
Sequence
Target Sequence 
>C. ELEGANS:173212_AT
acgaccattggaagtttcaaccatgggggnnncggnttaagcttggaacacccatggtaa
tttgggccttcaacgcggaatgggagaagtagtcaatttaatcagagaagcataagaaga
cattcttatttaattcagtatttgacaatttctacgagtttcttattttcatgctttatt
ttagtctctccggtttcat

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGACCATTGGAAGTTTCAACCATG 173 91 81 Antisense
TAAGCTTGGAACACCCATGGTAATT 83 629 118 Antisense
CATGGTAATTTGGGCCTTCAACGCG 158 207 133 Antisense
GTAATTTGGGCCTTCAACGCGGAAT 219 459 137 Antisense
TGGGCCTTCAACGCGGAATGGGAGA 272 403 143 Antisense
AACGCGGAATGGGAGAAGTAGTCAA 199 1 152 Antisense
GAAGACATTCTTATTTAATTCAGTA 686 339 196 Antisense
ATTTGACAATTTCTACGAGTTTCTT 440 17 220 Antisense
ACGAGTTTCTTATTTTCATGCTTTA 528 93 234 Antisense
TCATGCTTTATTTTAGTCTCTCCGG 461 621 249 Antisense
TTTATTTTAGTCTCTCCGGTTTCAT 237 453 255 Antisense
Sequence Source Affymetrix Proprietary Database