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[173210_s_at]

Description AV179694_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV179694 /DEF=Caenorhabditis elegans cDNA clone:yk596g11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 91      6grp_high1_10_10 > 49      4grp_highest_8_8 > 26      4grp_high_8_8 > 58      6grp_highest_nonorm > 75      6grp_total > 38      4grp_total > 61      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 685
1 2 3 4 range
A 1155.2
(2.4)
P 		833.4
(-0.4)
P 		1218.9
(3)
P 		533.6
(-3)
P 		685
B 1076.3
(3)
P 		944.1
(0.1)
P 		922.1
(-0.4)
P 		803.3
(-3)
P 		273
C 1106.8
(1.9)
P 		994.7
(0.8)
P 		1212.5
(3)
P 		623.3
(-3)
P 		589
avr 1112.8
(2.9) 		924.1
(0.5) 		1117.8
(3) 		653.4
(-3) 		464

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 764
1 2 3 4 5 6 range
A 1130.5
(3)
P 		895.5
(0.3)
P 		608.2
(-3)
P 		801.2
(-0.8)
P 		954.8
(1)
P 		912.9
(0.5)
P 		522
B 1246.1
(3)
P 		1047.8
(1.4)
P 		482
(-3)
P 		963.9
(0.8)
P 		832.1
(-0.3)
P 		918.2
(0.4)
P 		764
C 1022.1
(2.5)
P 		1053.3
(3)
P 		646.6
(-3)
P 		894.5
(0.7)
P 		835.7
(-0.2)
P 		968.7
(1.8)
P 		407
avr 1132.9
(3) 		998.9
(1.5) 		578.9
(-3) 		886.5
(0.3) 		874.2
(0.2) 		933.3
(0.8) 		554
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 345
1 2 3 4 range
A 420.6
(3)
P 		180.9
(-1.2)
P 		318.6
(1.2)
P 		78.1
(-3)
P 		343
B 343.2
(3)
P 		233.2
(-0.8)
P 		213.7
(-1.5)
P 		171.2
(-3)
P 		172
C 366.4
(1.9)
P 		286
(0.4)
P 		422.6
(3)
P 		105.1
(-3)
P 		318
avr 376.7
(3) 		233.4
(-0.3) 		318.3
(1.6) 		118.1
(-3) 		259

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 317
1 2 3 4 5 6 range
A 208.4
(-0.6)
P 		318.5
(3)
P 		132.5
(-3)
P 		203.2
(-0.7)
P 		288.1
(2)
P 		222.3
(-0.1)
P 		186
B 433.6
(3)
P 		348.8
(1.4)
P 		117.1
(-3)
P 		255.3
(-0.4)
P 		338.1
(1.2)
P 		342.4
(1.3)
P 		317
C 378.9
(3)
P 		321.4
(1.4)
P 		164.6
(-3)
P 		179.9
(-2.6)
P 		270.4
(-0)
P 		324.3
(1.5)
P 		214
avr 340.3
(3) 		329.6
(2.7) 		138.1
(-3) 		212.8
(-0.8) 		298.9
(1.8) 		296.3
(1.7) 		202
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173210_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26672
Sequence Type Exemplar sequence
Representative Public ID AV179694 NCBI
Target Description AV179694_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV179694 /DEF=Caenorhabditis elegans cDNA clone:yk596g11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076771(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076771 NCBI Caenorhabditis elegans F14B8.5a (F14B8.5) mRNA, complete cds. 11/11 None
F14B8.5a ENSEMBL cdna:known chromosome:CEL140:X:6924769:6928654:-1 gene:F14B8.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180965 2 1 NM_076771 173210_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6924824-6925094(-) 89.33 89.33
Public Domain and Genome References
Ensembl F14B8.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_509172 F14B8.5a [Caenorhabditis elegans] 1.0E-180
blast NP_509171 F14B8.5b [Caenorhabditis elegans] 1.0E-171
blast ABA61869 Hypothetical protein F14B8.5a [Caenorhabditis elegans] 1.0E-169
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509172.2 1 380-402
F14B8.5a 1 380-402
Sequence
Target Sequence 
>C. ELEGANS:173210_S_AT
tattttttgtacttgccactttacttttttcaaatttaaaacttcatatgttggcaccaa
cgcctcgtgtcagtttttcctgcccaaagcctttttttgtgaatttgacaactagccatt
gaaacacggtctccgcgttttgtgccgactaaaacaaaaccattcttcaattatttcact
cctgaaaactacgcttctgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTTTTTGTACTTGCCACTTTACT 406 661 77 Antisense
TGTACTTGCCACTTTACTTTTTTCA 637 559 84 Antisense
AAAACTTCATATGTTGGCACCAACG 678 127 114 Antisense
CATATGTTGGCACCAACGCCTCGTG 1 215 121 Antisense
TCCTGCCCAAAGCCTTTTTTTGTGA 194 593 154 Antisense
GTGAATTTGACAACTAGCCATTGAA 632 481 175 Antisense
ACTAGCCATTGAAACACGGTCTCCG 134 101 187 Antisense
TCCGCGTTTTGTGCCGACTAAAACA 608 595 208 Antisense
GACTAAAACAAAACCATTCTTCAAT 390 369 223 Antisense
TCTTCAATTATTTCACTCCTGAAAA 147 617 240 Antisense
CACTCCTGAAAACTACGCTTCTGAT 688 195 253 Antisense
Sequence Source Affymetrix Proprietary Database