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[173209_s_at]

Description AU113289_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AU113289 /DEF=Caenorhabditis elegans cDNA clone:yk705e12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 34      6grp_high1_10_10 > 32      4grp_highest_8_8 > 45      4grp_high_8_8 > 09      6grp_highest_nonorm > 23      6grp_total > 21      4grp_total > 15      6grp_highest_sub > 02_03      6grp_high1_sub > 02_03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2469
1 2 3 4 range
A 3151.8
(3)
P 		682.6
(-3)
P 		883.6
(-2.5)
P 		2490.3
(1.4)
P 		2469
B 2387
(1.7)
P 		748.7
(-3)
P 		835
(-2.8)
P 		2842.9
(3)
P 		2094
C 3093.5
(3)
P 		716.1
(-3)
P 		1052
(-2.2)
P 		2832.8
(2.3)
P 		2377
avr 2877.4
(3) 		715.8
(-3) 		923.5
(-2.4) 		2722
(2.6) 		2162

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2276
1 2 3 4 5 6 range
A 1832.9
(0.3)
P 		2087.7
(1.3)
P 		2513.6
(3)
P 		1868
(0.4)
P 		1512.5
(-1)
P 		1026.1
(-3)
P 		1488
B 2038.9
(-1.5)
P 		2606.2
(0.5)
P 		3302.3
(3)
P 		1897.9
(-2)
P 		1823.2
(-2.3)
P 		1621.9
(-3)
P 		1680
C 1854.2
(-1.4)
P 		2662.4
(3)
P 		1887.7
(-1.2)
P 		1913.7
(-1.1)
P 		1721.5
(-2.2)
P 		1568.5
(-3)
P 		1094
avr 1908.7
(-0.4) 		2452.1
(2.4) 		2567.9
(3) 		1893.2
(-0.5) 		1685.7
(-1.6) 		1405.5
(-3) 		1162
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 999
1 2 3 4 range
A 1147.6
(3)
P 		148.2
(-3)
P 		231
(-2.5)
P 		364.5
(-1.7)
P 		999
B 761.2
(3)
P 		184.9
(-3)
P 		193.5
(-2.9)
P 		605.8
(1.4)
P 		576
C 1024
(3)
P 		205.9
(-3)
P 		366.7
(-1.8)
P 		477.7
(-1)
P 		818
avr 977.6
(3) 		179.7
(-3) 		263.7
(-2.4) 		482.7
(-0.7) 		798

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 618
1 2 3 4 5 6 range
A 337.9
(-1.9)
P 		742.5
(3)
P 		547.4
(0.6)
P 		473.8
(-0.3)
P 		456.4
(-0.5)
P 		249.8
(-3)
P 		493
B 709.4
(0.4)
P 		867.5
(3)
P 		801.9
(1.9)
P 		502.7
(-3)
P 		740.8
(0.9)
P 		604.8
(-1.3)
P 		365
C 687.3
(1.2)
P 		812.4
(3)
P 		480.4
(-1.7)
P 		384.8
(-3)
P 		557
(-0.6)
P 		525.1
(-1)
P 		428
avr 578.2
(-0.9) 		807.5
(3) 		609.9
(-0.4) 		453.8
(-3) 		584.7
(-0.8) 		459.9
(-2.9) 		354
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173209_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27479
Sequence Type Exemplar sequence
Representative Public ID AU113289 NCBI
Target Description AU113289_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AU113289 /DEF=Caenorhabditis elegans cDNA clone:yk705e12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073054(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073054 NCBI Caenorhabditis elegans C50F4.1 (C50F4.1) mRNA, complete cds. 11/11 A 
SNAP00000009308 ENSEMBL cdna:SNAP chromosome:CEL140:V:9529429:9531719:1 11/11 None
GENEFINDER00000009324 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9529195:9531719:1 11/11 None
C50F4.1 ENSEMBL cdna:known chromosome:CEL140:V:9529377:9531834:1 gene:C50F4.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9531283-9531711(+) 82.33 82.33
Public Domain and Genome References
Gene Title
Ensembl C50F4.1
Entrez Gene 179333 Entrez gene
SwissProt Q18739 EMBL-EBI
WormBase CE26799 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94736 Hypothetical protein C50F4.1 [Caenorhabditis elegans] ref|NP_505455.1| C50F4.1 [Caenorhabditis elegans] 0.0
blast CAE72189 Hypothetical protein CBG19297 [Caenorhabditis briggsae] 1.0E-108
Protein Domains
Database ID Description E-Value
Pfam IPR004119 EMBL-EBI Protein of unknown function DUF227 4.6E-5
Pfam IPR004119 EMBL-EBI Protein of unknown function DUF227 4.6E-5
Sequence
Target Sequence 
>C. ELEGANS:173209_S_AT
cacttgttgactattacccaccaaagtatcaactgcatgatttgaaaagatggttccagg
aatatcaacctacagttctaatcaatggaatcgagtctctactttttacactgagtgaag
gttcggatgacgtcaaacaagatgctgcacgtcgatgggagacagcgttgaatgatactg
tagatttcttgactggaaactacatttcggataatgagcacccatttctctcacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACTTGTTGACTATTACCCACCAAA 309 195 14 Antisense
TACCCACCAAAGTATCAACTGCATG 442 649 28 Antisense
GGAATATCAACCTACAGTTCTAATC 542 533 72 Antisense
AATCAATGGAATCGAGTCTCTACTT 360 171 93 Antisense
GAGTCTCTACTTTTTACACTGAGTG 685 399 106 Antisense
ACTGAGTGAAGGTTCGGATGACGTC 237 97 123 Antisense
GGATGACGTCAAACAAGATGCTGCA 381 513 138 Antisense
AGATGCTGCACGTCGATGGGAGACA 391 67 153 Antisense
ATGGGAGACAGCGTTGAATGATACT 125 51 168 Antisense
GATACTGTAGATTTCTTGACTGGAA 635 423 187 Antisense
TAATGAGCACCCATTTCTCTCACAA 192 637 225 Antisense
Sequence Source Affymetrix Proprietary Database