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[173208_s_at]

Description AV178490_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV178490 /DEF=Caenorhabditis elegans cDNA clone:yk567a11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 26      6grp_high1_10_10 > 52      4grp_highest_8_8 > 14      4grp_high_8_8 > 15      6grp_highest_nonorm > 28      6grp_total > 62      4grp_total > 08      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5670
1 2 3 4 range
A 8820
(-3)
P 		10323.4
(-0.8)
P 		9626.5
(-1.8)
P 		12964.9
(3)
P 		4145
B 9471.8
(-3)
P 		10508.4
(-0.5)
P 		11367.6
(1.5)
P 		11976.7
(3)
P 		2505
C 9432.5
(-1.5)
P 		8017.3
(-3)
P 		9700.3
(-1.2)
P 		13687.7
(3)
P 		5670
avr 9241.4
(-3) 		9616.4
(-2.4) 		10231.5
(-1.4) 		12876.4
(3) 		3635

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5641
1 2 3 4 5 6 range
A 8360
(-2.3)
P 		10202.8
(-0.1)
P 		12803.8
(3)
P 		11475.7
(1.4)
P 		8832.2
(-1.7)
P 		7737.9
(-3)
P 		5066
B 7163.2
(-3)
P 		10363.5
(2.2)
P 		10267.5
(2)
P 		10855.5
(3)
P 		10201.4
(1.9)
P 		8335.4
(-1.1)
P 		3692
C 7801.2
(-3)
P 		10592.7
(1.2)
P 		11812.7
(3)
P 		9642.1
(-0.2)
P 		8689.3
(-1.7)
P 		8741.5
(-1.6)
P 		4012
avr 7774.8
(-3) 		10386.3
(1.1) 		11628
(3) 		10657.8
(1.5) 		9241
(-0.7) 		8271.6
(-2.2) 		3853
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1483
1 2 3 4 range
A 3211.4
(3)
P 		2240.9
(-1.4)
P 		2516.6
(-0.2)
P 		1897.8
(-3)
P 		1314
B 3020.5
(3)
P 		2595.3
(-2.4)
P 		2634.1
(-2)
P 		2552.2
(-3)
P 		468
C 3122.4
(1.6)
P 		2305
(-3)
P 		3380.9
(3)
P 		2308
(-3)
P 		1076
avr 3118.1
(3) 		2380.4
(-2.1) 		2843.9
(1.1) 		2252.7
(-3) 		865

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2604
1 2 3 4 5 6 range
A 1541.1
(-3)
P 		3628.6
(3)
P 		2788.4
(0.6)
P 		2910.5
(0.9)
P 		2665.2
(0.2)
P 		1883.9
(-2)
P 		2088
B 2492.4
(-3)
P 		3449.6
(0.5)
P 		2493.3
(-3)
P 		2875.2
(-1.6)
P 		4144.7
(3)
P 		3108.2
(-0.8)
P 		1652
C 2891.6
(1.4)
P 		3232.1
(3)
P 		3006.5
(2)
P 		1939
(-3)
P 		2811.7
(1)
P 		2926.3
(1.6)
P 		1293
avr 2308.4
(-3) 		3436.8
(3) 		2762.7
(-0.6) 		2574.9
(-1.6) 		3207.2
(1.8) 		2639.5
(-1.2) 		1128
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173208_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26653
Sequence Type Exemplar sequence
Representative Public ID AV178490 NCBI
Target Description AV178490_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV178490 /DEF=Caenorhabditis elegans cDNA clone:yk567a11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069802(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069802 NCBI Caenorhabditis elegans ZK809.3 (ZK809.3) mRNA, complete cds. 11/11 A 
SNAP00000011186 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11652379:11653283:1 11/11 None
GENEFINDER00000011194 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11652379:11653283:1 11/11 None
ZK809.3.2 ENSEMBL cdna:known chromosome:CEL140:IV:11652371:11653431:1 gene:ZK809.3 11/11 A 
ZK809.3.3 ENSEMBL cdna:known chromosome:CEL140:IV:11652371:11653360:1 gene:ZK809.3 11/11 None
ZK809.3.1 ENSEMBL cdna:known chromosome:CEL140:IV:11652373:11653431:1 gene:ZK809.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11652965-11653340(+) 87.0 87.0
Public Domain and Genome References
Gene Title
Ensembl ZK809.3
Entrez Gene 178096 Entrez gene
SwissProt Q23597 EMBL-EBI
WormBase CE03831 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92637 Hypothetical protein ZK809.3 [Caenorhabditis elegans] ref|NP_502203.1| ZK809.3 [Caenorhabditis elegans] 1.0E-124
blast CAE62078 Hypothetical protein CBG06101 [Caenorhabditis briggsae] 1.0E-121
Sequence
Target Sequence 
>C. ELEGANS:173208_S_AT
gaagttattgctagtgctccagcaattgaagagaaattccctggactcatggataaggga
ctcgccaacccatccaaggatgactactacacaccaacatttaataagcgtactgcttac
ctcgatgttggagagacaaaacgaccgtggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGTTATTGCTAGTGCTCCAGCAA 399 337 109 Antisense
GCTAGTGCTCCAGCAATTGAAGAGA 517 303 118 Antisense
GAAGAGAAATTCCCTGGACTCATGG 207 339 136 Antisense
TGGACTCATGGATAAGGGACTCGCC 125 547 150 Antisense
TGGATAAGGGACTCGCCAACCCATC 11 551 158 Antisense
CTCGCCAACCCATCCAAGGATGACT 28 233 169 Antisense
CAAGGATGACTACTACACACCAACA 280 183 183 Antisense
GACTACTACACACCAACATTTAATA 23 373 190 Antisense
ATAAGCGTACTGCTTACCTCGATGT 216 25 212 Antisense
GTACTGCTTACCTCGATGTTGGAGA 199 459 218 Antisense
GTTGGAGAGACAAAACGACCGTGGT 575 433 235 Antisense
Sequence Source Affymetrix Proprietary Database