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[173207_at]

Description AU114189_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AU114189 /DEF=Caenorhabditis elegans cDNA clone:yk716c10 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 92      6grp_total > 84      4grp_total > 56      6grp_high1_sub > 04_05      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1149
1 2 3 4 range
A 76.4
(-3)
A 		384.4
(-1.2)
P 		1129.1
(3)
P 		186.7
(-2.4)
A 		1053
B 90.7
(-3)
A 		367.6
(-1.5)
P 		1225.5
(3)
P 		114.3
(-2.9)
A 		1135
C 98.7
(-3)
A 		363.8
(-1.6)
P 		1197.7
(3)
P 		213.6
(-2.4)
A 		1099
avr 88.6
(-3) 		371.9
(-1.4) 		1184.1
(3) 		171.5
(-2.5) 		1096

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3672
1 2 3 4 5 6 range
A 103.2
(-3)
A 		261.5
(-2.7)
P 		1374.1
(-0.6)
P 		3141.7
(2.7)
P 		3303
(3)
P 		1650.3
(-0.1)
P 		3200
B 110.3
(-3)
M 		332.3
(-2.6)
P 		1368.2
(-0.7)
P 		3433.1
(3)
P 		3413
(3)
P 		1979.8
(0.4)
P 		3323
C 102.2
(-3)
P 		382.6
(-2.5)
P 		1185.2
(-1.2)
P 		3774.3
(3)
P 		3258.2
(2.2)
P 		1922.7
(-0)
P 		3672
avr 105.2
(-3) 		325.5
(-2.6) 		1309.2
(-0.8) 		3449.7
(3) 		3324.7
(2.8) 		1850.9
(0.1) 		3345
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 393
1 2 3 4 range
A 27.8
(-3)
A 		83.4
(-1.7)
P 		295.2
(3)
P 		27.3
(-3)
A 		268
B 28.9
(-2.9)
A 		90.8
(-1.5)
P 		284
(3)
P 		24.4
(-3)
A 		260
C 32.7
(-3)
A 		104.6
(-1.9)
P 		417.4
(3)
P 		36
(-2.9)
A 		385
avr 29.8
(-3) 		92.9
(-1.7) 		332.2
(3) 		29.2
(-3) 		303

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1368
1 2 3 4 5 6 range
A 19
(-3)
A 		93
(-2.5)
P 		299.3
(-1.3)
P 		796.8
(1.8)
P 		996.7
(3)
P 		401.8
(-0.7)
P 		978
B 38.4
(-3)
M 		110.6
(-2.7)
P 		332.2
(-1.7)
P 		909.3
(0.9)
P 		1386.7
(3)
P 		738.3
(0.1)
P 		1348
C 37.9
(-3)
P 		116.7
(-2.5)
P 		301.6
(-1.4)
P 		759
(1.3)
P 		1054.3
(3)
P 		643.6
(0.6)
P 		1016
avr 31.8
(-3) 		106.8
(-2.6) 		311
(-1.5) 		821.7
(1.3) 		1145.9
(3) 		594.6
(0) 		1114
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173207_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27492
Sequence Type Exemplar sequence
Representative Public ID AU114189 NCBI
Target Description AU114189_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AU114189 /DEF=Caenorhabditis elegans cDNA clone:yk716c10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000003528 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18783879:18789361:-1 None
GENEFINDER00000003524 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18781938:18783627:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18783157-18785122(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA16300 Hypothetical protein Y17D7B.3 [Caenorhabditis elegans] ref|NP_507670.1| Y17D7B.3 [Caenorhabditis elegans] 1.0E-114
blast CAE56021 Hypothetical protein CBG23579 [Caenorhabditis briggsae] 1.0E-43
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000003524 1 35-54
Sequence
Target Sequence 
>C. ELEGANS:173207_AT
aacaagcgttctcctggcggaaagtttttcctactctctgattatttttggagaagcctg
cctaactatatctaacaatatcggtgacattacagaatcaaaaacatggtcaattatttt
tccggataacatgtaccggtttcctgccagtgagtttagagattgcatgagtaaccgatg
aagcacatctgcaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACAAGCGTTCTCCTGGCGGAAAGT 524 133 46 Antisense
GGCGGAAAGTTTTTCCTACTCTCTG 354 541 61 Antisense
GTTTTTCCTACTCTCTGATTATTTT 232 449 69 Antisense
GATTATTTTTGGAGAAGCCTGCCTA 227 429 85 Antisense
GAAGCCTGCCTAACTATATCTAACA 593 343 98 Antisense
ACAATATCGGTGACATTACAGAATC 181 115 120 Antisense
AACATGGTCAATTATTTTTCCGGAT 90 121 148 Antisense
GGATAACATGTACCGGTTTCCTGCC 483 509 169 Antisense
TACCGGTTTCCTGCCAGTGAGTTTA 529 649 179 Antisense
GCCAGTGAGTTTAGAGATTGCATGA 388 279 191 Antisense
GTAACCGATGAAGCACATCTGCAAC 603 461 216 Antisense
Sequence Source Affymetrix Proprietary Database