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[173206_s_at] Alcohol/other dehydrogenases, short chain type

Description AU114202_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AU114202 /DEF=Caenorhabditis elegans cDNA clone:yk716d12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 12      6grp_high1_10_10 > 01      4grp_highest_8_8 > 40      4grp_high_8_8 > 50      6grp_highest_nonorm > 14      6grp_total > 23      4grp_total > 53      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4210
1 2 3 4 range
A 5137.4
(3)
P 		4856.1
(2.5)
P 		3726.9
(0.7)
P 		1519.6
(-3)
P 		3618
B 5652
(3)
P 		3748.4
(0.2)
P 		3886.9
(0.4)
P 		1527.2
(-3)
P 		4125
C 5289.8
(3)
P 		3865.6
(0.8)
P 		3462.1
(0.2)
P 		1442
(-3)
P 		3848
avr 5359.7
(3) 		4156.7
(1.1) 		3692
(0.4) 		1496.3
(-3) 		3863

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4076
1 2 3 4 5 6 range
A 5715
(3)
P 		3764
(0.1)
P 		3865.7
(0.3)
P 		3552.8
(-0.2)
P 		2276.8
(-2.1)
P 		1639.4
(-3)
P 		4076
B 4624.6
(3)
P 		3656.1
(1)
P 		3911.1
(1.6)
P 		3401.8
(0.5)
P 		2280.7
(-1.7)
P 		1662.3
(-3)
P 		2962
C 4770.4
(2.5)
P 		3302.7
(-0.3)
P 		5042.6
(3)
P 		3596.9
(0.2)
P 		2207.5
(-2.4)
P 		1908.2
(-3)
P 		3134
avr 5036.7
(3) 		3574.3
(0.3) 		4273.1
(1.6) 		3517.2
(0.2) 		2255
(-2.1) 		1736.6
(-3) 		3300
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1648
1 2 3 4 range
A 1870.5
(3)
P 		1054.1
(0)
P 		974.3
(-0.3)
P 		222.4
(-3)
P 		1648
B 1802.4
(3)
P 		925.8
(-0.6)
P 		900.7
(-0.7)
P 		325.4
(-3)
P 		1477
C 1751.1
(3)
P 		1111.4
(0.5)
P 		1206.6
(0.8)
P 		243.1
(-3)
P 		1508
avr 1808
(3) 		1030.4
(-0) 		1027.2
(-0) 		263.6
(-3) 		1544

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1369
1 2 3 4 5 6 range
A 1053.5
(1.2)
P 		1338.7
(3)
P 		841.9
(-0.2)
P 		901.1
(0.2)
P 		687
(-1.2)
P 		399.1
(-3)
P 		940
B 1609.1
(3)
P 		1217
(0.6)
P 		949.7
(-1)
P 		901
(-1.3)
P 		926.6
(-1.1)
P 		619.9
(-3)
P 		989
C 1768.2
(3)
P 		1007.7
(-1)
P 		1283.4
(0.4)
P 		723.3
(-2.6)
P 		714.3
(-2.6)
P 		638.8
(-3)
P 		1129
avr 1476.9
(3) 		1187.8
(1.1) 		1025
(0.1) 		841.8
(-1.1) 		776
(-1.5) 		552.6
(-3) 		924
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173206_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27494
Sequence Type Exemplar sequence
Representative Public ID AU114202 NCBI
Target Description AU114202_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AU114202 /DEF=Caenorhabditis elegans cDNA clone:yk716d12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067359(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067359 NCBI Caenorhabditis elegans T03F6.1 (T03F6.1) mRNA, complete cds. 11/11 A 
SNAP00000014318 ENSEMBL cdna:SNAP chromosome:CEL140:III:13393435:13394366:1 11/11 None
GENEFINDER00000014325 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:13393435:13394366:1 11/11 None
T03F6.1 ENSEMBL cdna:known chromosome:CEL140:III:13393419:13394464:1 gene:T03F6.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:13394083-13394392(+) 85.0 85.0
Public Domain and Genome References
Gene Title Alcohol/other dehydrogenases, short chain type
Ensembl T03F6.1
Entrez Gene 176762 Entrez gene
SwissProt Q9XVJ3 EMBL-EBI
WormBase CE16335 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1596947_AT similar to Dihydropteridine reductase (HDHPR) (Quinoid dihydropteridine reductase) cfa
CANINE:1587011_S_AT similar to Dihydropteridine reductase (HDHPR) (Quinoid dihydropteridine reductase) cfa
CANINE:1586072_S_AT similar to Dihydropteridine reductase (HDHPR) (Quinoid dihydropteridine reductase) cfa
CANINE_2:CFA.10824.1.A1_AT similar to Dihydropteridine reductase (HDHPR) (Quinoid dihydropteridine reductase) cfa
CANINE_2:CFA.6176.1.A1_AT similar to Dihydropteridine reductase (HDHPR) (Quinoid dihydropteridine reductase) cfa
CANINE_2:CFAAFFX.23254.1.S1_S_AT similar to Dihydropteridine reductase (HDHPR) (Quinoid dihydropteridine reductase) cfa
DROSOPHILA_2:1641451_AT Dihydropteridine reductase dm
DROSGENOME1:148447_AT Dihydropteridine reductase dm
CHICKEN:GGAAFFX.12135.1.S1_AT quinoid dihydropteridine reductase gga
CHICKEN:GGAAFFX.8878.1.S1_S_AT quinoid dihydropteridine reductase gga
HG-U95AV2:260_AT quinoid dihydropteridine reductase hs
HC-G110:260_AT quinoid dihydropteridine reductase hs
HU35KSUBD:RC_T69009_S_AT quinoid dihydropteridine reductase hs
HUGENEFL:M16447_AT quinoid dihydropteridine reductase hs
HG-U133A:209123_AT quinoid dihydropteridine reductase hs
HG-U133_PLUS_2:209123_AT quinoid dihydropteridine reductase hs
HG-FOCUS:209123_AT quinoid dihydropteridine reductase hs
HG-U133A_2:209123_AT quinoid dihydropteridine reductase hs
U133_X3P:G12653600_3P_AT Quinoid dihydropteridine reductase hs
U133_X3P:HS.134605.0.A1_3P_AT Quinoid dihydropteridine reductase hs
HG-U133_PLUS_2:238616_AT Quinoid dihydropteridine reductase hs
HG-U133B:238616_AT Quinoid dihydropteridine reductase hs
HG-U95D:90900_AT Quinoid dihydropteridine reductase hs
MU11KSUBA:AA123328_S_AT quininoid dihydropteridine reductase mm
MG-U74AV2:96948_AT quininoid dihydropteridine reductase mm
MOE430A:1423664_AT quininoid dihydropteridine reductase mm
MOUSE430A_2:1423664_AT quininoid dihydropteridine reductase mm
MOUSE430_2:1423664_AT quininoid dihydropteridine reductase mm
MOE430A:1437993_X_AT quininoid dihydropteridine reductase mm
MOUSE430A_2:1437993_X_AT quininoid dihydropteridine reductase mm
MOUSE430_2:1437993_X_AT quininoid dihydropteridine reductase mm
MU19KSUBC:TC35976_S_AT Quininoid dihydropteridine reductase (Qdpr), mRNA mm
RT-U34:J03481MRNA_AT quinoid dihydropteridine reductase rn
RG-U34A:J03481MRNA_AT quinoid dihydropteridine reductase rn
RT-U34:J03481MRNA_G_AT quinoid dihydropteridine reductase rn
RG-U34A:J03481MRNA_G_AT quinoid dihydropteridine reductase rn
RAE230A:1367695_AT quinoid dihydropteridine reductase rn
RAT230_2:1367695_AT quinoid dihydropteridine reductase rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03278 Hypothetical protein T03F6.1 [Caenorhabditis elegans] ref|NP_499760.1| T03F6.1 [Caenorhabditis elegans] pdb|1OOE|B Chain B, Structural Genomics Of Caenorhabditis Elegans : Dihydropteridine Reductase pdb|1OOE|A Chain A, Structural Genomics Of Caenorhabditis Elegans : Dihydropteridine Reductase 1.0E-115
blast CAE62856 Hypothetical protein CBG07035 [Caenorhabditis briggsae] 1.0E-105
blast XP_392684 PREDICTED: similar to ENSANGP00000022132 [Apis mellifera] 8.0E-63
Sequence
Target Sequence 
>C. ELEGANS:173206_S_AT
attgcctgacaattcggccgttttgacaattatgccagtcactttggacaccccaatgaa
cagaaaatggatgccaaatgctgatcattcaagctggactccactctcattcatctctga
acatcttctcaaatggaccacagaaacatcgagccgtccatcttccggggctctcctcaa
aataaccactgaaaatggaacatcgactatcactccacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGCCTGACAATTCGGCCGTTTTG 486 7 15 Antisense
TCGGCCGTTTTGACAATTATGCCAG 578 607 28 Antisense
TTATGCCAGTCACTTTGGACACCCC 525 675 44 Antisense
GTCACTTTGGACACCCCAATGAACA 320 463 52 Antisense
AATGGATGCCAAATGCTGATCATTC 361 163 80 Antisense
CTGATCATTCAAGCTGGACTCCACT 430 237 95 Antisense
TCATTCAAGCTGGACTCCACTCTCA 288 619 99 Antisense
CACTCTCATTCATCTCTGAACATCT 39 199 116 Antisense
GAACATCTTCTCAAATGGACCACAG 225 351 133 Antisense
GGCTCTCCTCAAAATAACCACTGAA 666 537 183 Antisense
TGGAACATCGACTATCACTCCACAA 612 547 210 Antisense
Sequence Source Affymetrix Proprietary Database