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[173204_s_at] UDP galactosyltransferase

Description AU115657_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AU115657 /DEF=Caenorhabditis elegans cDNA clone:yk735c12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 34      6grp_high1_10_10 > 43      4grp_highest_8_8 > 13      4grp_high_8_8 > 23      6grp_highest_nonorm > 43      6grp_total > 30      4grp_total > 24      6grp_highest_sub > 02_03      6grp_cgc > 72      6grp_high1_sub > 02      6grp_cgc_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 691
1 2 3 4 range
A 1722.8
(-3)
P 		1758.8
(-2.1)
P 		1882.3
(1.1)
P 		1954.4
(3)
P 		232
B 1744.2
(-3)
P 		2125.6
(1.6)
P 		2070.5
(1)
P 		2238.2
(3)
P 		494
C 1670.1
(-3)
P 		1755.9
(-2.3)
P 		2082.9
(0.6)
P 		2361.5
(3)
P 		691
avr 1712.4
(-3) 		1880.1
(-0.9) 		2011.9
(0.8) 		2184.7
(3) 		472

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 927
1 2 3 4 5 6 range
A 666
(-1.4)
P 		1335.9
(2.9)
P 		1349.7
(3)
P 		1071.5
(1.2)
P 		422.9
(-3)
P 		644.2
(-1.6)
P 		927
B 1011
(0.5)
P 		1300.5
(3)
P 		1219.3
(2.3)
P 		1116.5
(1.4)
P 		690.9
(-2.2)
P 		596.1
(-3)
P 		704
C 765
(-0.7)
P 		1245.2
(2.6)
P 		1169.2
(2.1)
P 		1296.3
(3)
P 		423.9
(-3)
P 		626.2
(-1.6)
P 		872
avr 814
(-0.7) 		1293.9
(3) 		1246.1
(2.6) 		1161.4
(2) 		512.6
(-3) 		622.2
(-2.2) 		781
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 440
1 2 3 4 range
A 627.3
(3)
P 		381.8
(-1.3)
P 		492.1
(0.6)
P 		286.1
(-3)
P 		341
B 556.2
(3)
P 		525
(0.6)
P 		479.8
(-2.8)
P 		477
(-3)
P 		79
C 552.8
(-0.2)
P 		504.8
(-1)
P 		725.9
(3)
P 		398.2
(-3)
P 		328
avr 578.8
(3) 		470.5
(-0.4) 		565.9
(2.6) 		387.1
(-3) 		192

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 352
1 2 3 4 5 6 range
A 122.8
(-3)
P 		475.1
(3)
P 		293.9
(-0.1)
P 		271.8
(-0.5)
P 		127.6
(-2.9)
P 		156.8
(-2.4)
P 		352
B 351.8
(0.7)
P 		432.9
(3)
P 		296.1
(-0.9)
P 		295.7
(-0.9)
P 		280.7
(-1.3)
P 		222.3
(-3)
P 		211
C 283.6
(0.6)
P 		380
(3)
P 		297.6
(1)
P 		260.7
(0.1)
P 		137.2
(-3)
P 		209.6
(-1.2)
P 		243
avr 252.7
(-1.3) 		429.3
(3) 		295.9
(-0.2) 		276.1
(-0.7) 		181.8
(-3) 		196.2
(-2.7) 		248
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173204_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27560
Sequence Type Exemplar sequence
Representative Public ID AU115657 NCBI
Target Description AU115657_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AU115657 /DEF=Caenorhabditis elegans cDNA clone:yk735c12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075711(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075711 NCBI Caenorhabditis elegans B0310.5 (B0310.5) mRNA, complete cds. 11/11 A 
GENEFINDER00000007910 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:526074:530139:-1 11/11 None
B0310.5 ENSEMBL cdna:known chromosome:CEL140:X:525943:530177:-1 gene:B0310.5 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000007902 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:526126-526672(-) 84.0 84.0
Public Domain and Genome References
Gene Title UDP galactosyltransferase
Gene Symbol ugt-46
Ensembl B0310.5
Entrez Gene 180404 Entrez gene
SwissProt Q10941 EMBL-EBI
WormBase CE03878 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16758 transferase activity, transferring hexosyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA81769 Udp-glucuronosyltransferase protein 46 [Caenorhabditis elegans] ref|NP_508112.1| B0310.5 [Caenorhabditis elegans] sp|Q10941|UGT14_CAEEL Putative UDP-glucuronosyltransferase UGT14 precursor (UDPGT) 0.0
blast CAE70548 Hypothetical protein CBG17190 [Caenorhabditis briggsae] 0.0
blast CAE56922 Hypothetical protein CBG24767 [Caenorhabditis briggsae] 1.0E-172
Protein Domains
Database ID Description E-Value
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 3.3E-11
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 5.4E-17
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508112.1 1 493-515
B0310.5 1 493-515
GENEFINDER00000007910 1 493-515
Sequence
Target Sequence 
>C. ELEGANS:173204_S_AT
gtactccttgaaagctcagagaatacgcgatcttatcaaatcaaaacccctcagttcttc
tcaattactgattaaaactactgaatgggcaatcaaaaatcacggactcgacgaattaag
ttcgaaagccgtggtcaaacaacttggacttattacaatttagatgtgattattccagta
ttttggcttagcatttctcttgtgatacctaccatttttgggtggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTACTCCTTGAAAGCTCAGAGAATA 580 459 33 Antisense
AGCTCAGAGAATACGCGATCTTATC 668 79 45 Antisense
GCGATCTTATCAAATCAAAACCCCT 690 289 59 Antisense
CAAATCAAAACCCCTCAGTTCTTCT 302 193 69 Antisense
GGCAATCAAAAATCACGGACTCGAC 407 533 120 Antisense
TAAGTTCGAAAGCCGTGGTCAAACA 154 573 149 Antisense
AGCCGTGGTCAAACAACTTGGACTT 564 83 159 Antisense
TAGATGTGATTATTCCAGTATTTTG 338 653 193 Antisense
TTGGCTTAGCATTTCTCTTGTGATA 347 709 215 Antisense
ATTTCTCTTGTGATACCTACCATTT 151 17 225 Antisense
GTGATACCTACCATTTTTGGGTGGT 101 453 234 Antisense
Sequence Source Affymetrix Proprietary Database