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[173203_at]

Description AU114082_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AU114082 /DEF=Caenorhabditis elegans cDNA clone:yk715a12 : 3prime end, single read.
Cluster 6grp_total > 55      4grp_total > 22      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 68.3
(2.2)
P 		50.9
(-3)
A 		54.8
(-1.8)
A 		70.8
(3)
A 		20
B 77.5
(3)
P 		56.8
(-3)
A 		61.6
(-1.6)
M 		60.6
(-1.9)
A 		21
C 117.9
(1.3)
P 		96.9
(-0.9)
A 		75.6
(-3)
A 		135.2
(3)
P 		60
avr 87.9
(2.8) 		68.2
(-2) 		64
(-3) 		88.9
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 25.2
(-1.2)
A 		51.8
(2.3)
A 		56.9
(3)
M 		11.2
(-3)
A 		37.2
(0.4)
A 		32.2
(-0.2)
A 		46
B 33.1
(-2.2)
A 		54
(1.4)
A 		28.7
(-3)
A 		63.2
(3)
A 		31.6
(-2.5)
A 		53.5
(1.3)
A 		35
C 24.5
(-1.5)
A 		51.9
(0.4)
A 		89.8
(3)
A 		51.3
(0.3)
A 		3.4
(-3)
A 		64.1
(1.2)
M 		86
avr 27.6
(-2.4) 		52.6
(2) 		58.5
(3) 		41.9
(0.1) 		24.1
(-3) 		49.9
(1.5) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 24.9
(3)
P 		11.1
(-2.7)
A 		14.3
(-1.4)
A 		10.4
(-3)
A 		15
B 24.7
(3)
P 		14
(-2.4)
A 		14.3
(-2.3)
M 		12.9
(-3)
A 		12
C 39
(3)
P 		27.9
(-1.1)
A 		26.3
(-1.7)
A 		22.8
(-3)
P 		16
avr 29.5
(3) 		17.7
(-2) 		18.3
(-1.8) 		15.4
(-3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 4.6
(-2.3)
A 		18.4
(3)
A 		12.4
(0.7)
M 		2.8
(-3)
A 		11.2
(0.2)
A 		7.8
(-1.1)
A 		16
B 11.5
(-0.9)
A 		18
(2.1)
A 		7
(-3)
A 		16.7
(1.5)
A 		12.8
(-0.3)
A 		19.9
(3)
A 		13
C 9.1
(-0.8)
A 		15.8
(1)
A 		22.9
(3)
A 		10.3
(-0.5)
A 		1.1
(-3)
A 		21.5
(2.6)
M 		22
avr 8.4
(-3) 		17.4
(3) 		14.1
(0.8) 		9.9
(-2) 		8.4
(-3) 		16.4
(2.3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173203_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27490
Sequence Type Exemplar sequence
Representative Public ID AU114082 NCBI
Target Description AU114082_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AU114082 /DEF=Caenorhabditis elegans cDNA clone:yk715a12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) AU114082
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
AU114082 AU114082_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AU114082 /DEF=Caenorhabditis elegans cDNA clone:yk715a12 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:15074461-15074641(+) 60.0 60.0
Sequence
Target Sequence 
>C. ELEGANS:173203_AT
gatgtgggtcagtcgatcctaaggtactggcgaacgccttgtatcatcggtggcgaaaag
cttgcttttagtccccgcttgtcgaaagggaatagggttaatattccctaactgagatgc
aaagattgtgttcttcggagcacaagcgcggtaacgcattcgaacttggttagtcgcctt
cgataag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGTGGGTCAGTCGATCCTAAGGT 143 407 16 Antisense
GTGGGTCAGTCGATCCTAAGGTACT 649 487 19 Antisense
CGATCCTAAGGTACTGGCGAACGCC 239 247 29 Antisense
GGTACTGGCGAACGCCTTGTATCAT 689 503 38 Antisense
GCGAACGCCTTGTATCATCGGTGGC 99 289 45 Antisense
GTATCATCGGTGGCGAAAAGCTTGC 35 455 56 Antisense
GCGAAAAGCTTGCTTTTAGTCCCCG 206 251 68 Antisense
TAGTCCCCGCTTGTCGAAAGGGAAT 673 599 84 Antisense
AGGGTTAATATTCCCTAACTGAGAT 9 7 109 Antisense
ATATTCCCTAACTGAGATGCAAAGA 22 19 116 Antisense
AACTTGGTTAGTCGCCTTCGATAAG 216 59 178 Antisense
Sequence Source Affymetrix Proprietary Database