[Home] | [Total List]

[173201_s_at]

Description AU113217_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AU113217 /DEF=Caenorhabditis elegans cDNA clone:yk704e10 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 20      4grp_high_8_8 > 41      6grp_total > 41      4grp_total > 54      6grp_cgc > 71      6grp_cgc_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 337
1 2 3 4 range
A 324.1
(3)
P 		150
(-0.8)
P 		114.8
(-1.5)
P 		47.3
(-3)
A 		277
B 297.9
(3)
P 		183.2
(0.5)
P 		103.8
(-1.2)
P 		21.5
(-3)
A 		276
C 358.8
(3)
P 		179.9
(-0.5)
P 		121.4
(-1.7)
P 		54.2
(-3)
P 		305
avr 326.9
(3) 		171
(-0.3) 		113.3
(-1.5) 		41
(-3) 		286

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 292
1 2 3 4 5 6 range
A 306.6
(1.6)
P 		252.8
(0.5)
P 		375.6
(3)
P 		286.3
(1.2)
P 		126
(-2.1)
P 		83.2
(-3)
A 		292
B 236.5
(0.9)
P 		226.3
(0.6)
P 		306
(3)
P 		227.9
(0.6)
P 		168.5
(-1.2)
P 		109
(-3)
P 		197
C 279.9
(0.9)
P 		273.7
(0.8)
P 		362.2
(3)
P 		362.1
(3)
P 		142.5
(-2.5)
P 		121.4
(-3)
P 		241
avr 274.3
(1.2) 		250.9
(0.6) 		347.9
(3) 		292.1
(1.6) 		145.7
(-2) 		104.5
(-3) 		243
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 118
(3)
P 		32.6
(-1.6)
P 		30
(-1.8)
P 		6.9
(-3)
A 		111
B 95
(3)
P 		45.2
(-0.3)
P 		24
(-1.7)
P 		4.6
(-3)
A 		90
C 118.8
(3)
P 		51.7
(-0.7)
P 		42.3
(-1.2)
P 		9.1
(-3)
P 		110
avr 110.6
(3) 		43.2
(-0.9) 		32.1
(-1.5) 		6.9
(-3) 		104

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 56.5
(0.1)
P 		89.9
(3)
P 		81.8
(2.3)
P 		72.6
(1.5)
P 		38
(-1.5)
P 		20.3
(-3)
A 		70
B 82.3
(3)
P 		75.3
(2)
P 		74.3
(1.8)
P 		60.4
(-0.2)
P 		68.5
(1)
P 		40.7
(-3)
P 		42
C 103.8
(3)
P 		83.5
(1.1)
P 		92.2
(1.9)
P 		72.8
(0.1)
P 		46.1
(-2.5)
P 		40.6
(-3)
P 		63
avr 80.9
(2.8) 		82.9
(3) 		82.8
(3) 		68.6
(1.2) 		50.9
(-0.9) 		33.9
(-3) 		49
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173201_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27476
Sequence Type Exemplar sequence
Representative Public ID AU113217 NCBI
Target Description AU113217_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AU113217 /DEF=Caenorhabditis elegans cDNA clone:yk704e10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061604(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061604 NCBI Caenorhabditis elegans T07H3.6 (T07H3.6) mRNA, complete cds. 11/11 A 
SNAP00000009955 ENSEMBL cdna:SNAP chromosome:CEL140:II:1599583:1600702:-1 11/11 None
GENEFINDER00000009963 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1599583:1600720:-1 11/11 None
T07H3.6 ENSEMBL cdna:known chromosome:CEL140:II:1599476:1600719:-1 gene:T07H3.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1599570-1599880(-) 88.0 88.0
Public Domain and Genome References
Gene Title
Gene Symbol bath-26
Ensembl T07H3.6
Entrez Gene 173531 Entrez gene
SwissProt O76611 EMBL-EBI
WormBase CE32065 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494005 T07H3.6 [Caenorhabditis elegans] gb|AAC26307.2| Hypothetical protein T07H3.6 [Caenorhabditis elegans] 0.0
blast CAE60939 Hypothetical protein CBG04662 [Caenorhabditis briggsae] 3.0E-37
blast CAE72470 Hypothetical protein CBG19644 [Caenorhabditis briggsae] 3.0E-31
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 8.7E-24
Pfam IPR002083 EMBL-EBI MATH 8.7E-24
Sequence
Target Sequence 
>C. ELEGANS:173201_S_AT
tttggcaatcaaataccgtgcaattgaaatattttcgaaatgcgaaaagtggttgctgga
aggatcaaaaatgtcgccgaggaaacaactgcagatggccattcgatgcagcttttggga
actggaacaaaagtgcttgtcggagttgaaaaccaagcaggacattcaagccgttcttcc
ggccaatttgatgtctctggacccaaacatggtgctcactctgtttgaaaaacttctcac
tgttacctaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTGGCAATCAAATACCGTGCAATT 470 665 16 Antisense
GGAAGGATCAAAAATGTCGCCGAGG 538 531 73 Antisense
ATGTCGCCGAGGAAACAACTGCAGA 133 49 86 Antisense
AACAACTGCAGATGGCCATTCGATG 230 135 99 Antisense
GGCCATTCGATGCAGCTTTTGGGAA 267 539 112 Antisense
AAGTGCTTGTCGGAGTTGAAAACCA 204 155 146 Antisense
AGCAGGACATTCAAGCCGTTCTTCC 575 75 171 Antisense
TCTTCCGGCCAATTTGATGTCTCTG 457 617 190 Antisense
GTCTCTGGACCCAAACATGGTGCTC 332 471 208 Antisense
AACATGGTGCTCACTCTGTTTGAAA 203 137 221 Antisense
TGAAAAACTTCTCACTGTTACCTAA 662 543 241 Antisense
Sequence Source Affymetrix Proprietary Database